Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00229 ATGATATCAACTCTTTCAAATTCTTTAAGTACTCCATATCTGAGGATAGGGAAGGATGATATGAAAAATGGCCAGGATTTATCGTCTTATATTGTTGTGAGGTTTAAAGAAGGAGAAGTATTTTCGACAGTAAAATTGTTAAAAAATCATAATTCACGAAAGTTGTTAACGACTTCAATAGTCCATAAATCAAAATGGAAGCAAGCTGCCATCGTCATATCTCACCTGTCTATCGTGCACTTCGTCCAACTCCAGCTGCCGTTTAGCCGCTCATCGGTTTGTCCATTCCGTTACAGATCCCGCTGCCAGTGTCATCGACTGCCGCCAGTTGCTGCTGGTCCCCGTTTTTGCGGTGGGATTTTAATACGCCGTCCAGCACCGGTTGAATTATTTCCGAGTCTTGAAGTATTTGTTGGTTTTAAAATTGAAGAATTGTTTTCGAGTGCTAACATGGAAGGTATGTTTAGAATGTTCCAGCTTGATAGTTCCGTTGTGGCACTGCCTCATTTGACACACACAGACATCATTCGTCACTTGCAACAAAGAGAAGCTTCTCAACTAACTGCATTGCTAAAGGAAATGAAAGAAGGACTGGACACGGTCACTAATAAAGTCCAGGCTTTAACGGCAAAGGTAAAATCAAACCAGCTTCCGACATCAGATGGGATAAGCTATCTTGATGCCAAATATCTTTTACTTCTAAATTATTGTTCTTCACTTGTATACTATTTGCTCCGCAAAGCCAAGGGTTTCTCAATCGAGGGTCATCCTGTTGTCAGGAGTCTTGTAGAGATAAGGTTATTTCTAGAGAAGACTTGTTTACAAGAATGGGACCTGGTTTTAAGTATTCTTCGACGCCTTTTGTTGACACAGATTCGACCTATTGATAAGAAGCTTGAGTACCAGATTCAGAAGCTAACAAAAGTTTCTGTTGTGTCAAAAGAGAATGCATTCATGGACGAAAAGGATTCTGCTACACCTCAGGATGTGGATGATCGATTAAAATATCGTCCAAACCCTGACATGCTTGTCAGTAAAACAGAAGGGACTGCTGAGGATGGAGATGGTATATATCGTCCACCAAAGTTTGCCCCTACTTCTATGGAAGAAGATAAGAAGTCTCGAAAGGAAAGAAATTCCATGAGAAAGGATTTACAGACACTCCGACAAGCTAGACAAAGTGATTATATGAGGGAGCTGATGGATGACATGGCTGGAAAACCTGAAGAGATTAAAGAATCCGCTGGACTGGAAAATAGAGAAGTTGCTAGATATGTGGCAAGAATGGAGGAACGTGACCGAAGAGAAGAGGAGCTTTTCACTCGTGCACCGCTCACAAAGATGGAGAAAAAGAGAGAAAAATACCTAAAGAAGTCTAGATATGGGATGGGTGGTGTAACTGATAGTTTCTATGAAGAAGTGAAATCCTTGCCCTTGGAAGGTGCTGATGATGAGCAACCGACAGATTTTGGTAGTGGTAGCGGCAGAATGAGAAAACATAAGAAACGCAAGGCATTGAAGACCATGTCATATCAGGATGATGGGAAATACTTCGGGACAAAATTGTATGTCAATGTGAAAATCCCTATATCTTTGGGTGAAATTTACTATACTCTTAAGAGTGTTGTCTTTTATAATAATTTCTTGTTCTTAAAAAAAGACCAATCGTTGAAAAGTTGTTGGTATCATTTCCAAAGTTGTGAACTGACACAGAAGTTTGAAGCTGCGTTCTTCCTATTTGTCTTGAGAAAGTCCACAAGCTTATCCAGGTCACGTTCATTCTTATCTCCGTTTCCAAACAACCCTTTCATTTCCATTGCCCTCTCTCTCAACAACTTCCCTCCACCTGATCCTTCCGCCATGGCCGACCTCACCGATTCTGAAACCGATTCACGTGTGAATGATCCATCTCTCTCATTCCTCTCAATCTCAATCCCGACCATTTCCTTCTCCAATATCCTTGCGTTCAATCCTTGA 1977 40.97 MISTLSNSLSTPYLRIGKDDMKNGQDLSSYIVVRFKEGEVFSTVKLLKNHNSRKLLTTSIVHKSKWKQAAIVISHLSIVHFVQLQLPFSRSSVCPFRYRSRCQCHRLPPVAAGPRFCGGILIRRPAPVELFPSLEVFVGFKIEELFSSANMEGMFRMFQLDSSVVALPHLTHTDIIRHLQQREASQLTALLKEMKEGLDTVTNKVQALTAKVKSNQLPTSDGISYLDAKYLLLLNYCSSLVYYLLRKAKGFSIEGHPVVRSLVEIRLFLEKTCLQEWDLVLSILRRLLLTQIRPIDKKLEYQIQKLTKVSVVSKENAFMDEKDSATPQDVDDRLKYRPNPDMLVSKTEGTAEDGDGIYRPPKFAPTSMEEDKKSRKERNSMRKDLQTLRQARQSDYMRELMDDMAGKPEEIKESAGLENREVARYVARMEERDRREEELFTRAPLTKMEKKREKYLKKSRYGMGGVTDSFYEEVKSLPLEGADDEQPTDFGSGSGRMRKHKKRKALKTMSYQDDGKYFGTKLYVNVKIPISLGEIYYTLKSVVFYNNFLFLKKDQSLKSCWYHFQSCELTQKFEAAFFLFVLRKSTSLSRSRSFLSPFPNNPFISIALSLNNFPPPDPSAMADLTDSETDSRVNDPSLSFLSISIPTISFSNILAFNP 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1731194 1739882 - MELO3C003509.2.1 Cme04g00229 324490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00229 658 MobiDBLite consensus disorder prediction 320 393 - -
Cme04g00229 658 PANTHER LEUCINE ZIPPER FACTOR-LIKE 179 504 - -
Cme04g00229 658 MobiDBLite consensus disorder prediction 320 339 - -
Cme04g00229 658 Pfam Sas10/Utp3/C1D family 191 271 IPR007146 -
Cme04g00229 658 PANTHER SOMETHING ABOUT SILENCING PROTEIN 10-RELATED 179 504 IPR007146 -
Cme04g00229 658 Coils Coil 191 211 - -
Cme04g00229 658 MobiDBLite consensus disorder prediction 365 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00229 K14765 NGDN, LCP5; U3 small nucleolar ribonucleoprotein protein LCP5 - csv:101204682 558.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00229 Cme-Chr4:1731194 Cme11g02437 Cme-Chr11:31148217 1.28E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g534 . . . . . . . . . . Cma01g01470 . . . . . . . . . . . . . . . . . . . . Cone4ag1287 Cone7ag0866 . . Lsi04g02286 Csa03g04502 . . . . . . . . . . Sed05g1553 Cmo01g01526 . . . . . . Cpe02g00482 Bhi09g02514 Tan01g3865 Cmetu04g2990 . Hepe01g2178 Mch11g0717 . Cla11g01435 Cam11g1489 . . Clacu11g1651 Cmu11g1468 Cre11g1886 . . . Cme04g00229
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007584 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 6 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00229 Cme_Chr04 FPKM 1.137485 1.46745 1.536048 1.826209 4.297839 4.118216 4.129814 0.832888 0.89153 0.969923