Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00232 ATGCCGCATAGAACGACTTACTTCTTCCCCAGGCAATTTCCGGATCGCGGATTTGACTCGGCGTCAACCTCCAAACACATTTTGGATCACGAGAAGAAAATCAACAAAGACACTTTTAGTACGGAAAGCGACGCGAAACCGACTCCGAGGCCAGCGCGCGACTTTAGCGTCACGAAGAGTTCGGCTGTATCGGATCTTTTCACGGGGGACAAGGCACAAAGCAATAAGAAACTGCCTGCTTTTTACGATTGGTTGGTGGACAAGAAAGCAACGCGGTCGGCAACAGCTCACGTGAAAACTTGGCTTTCCAACTGCGATGAGGACCGCGAACTTTTGCTTCCGCCACCTACCTCGGAGCCGGAGCACGATACAACGTCGGTTAAGGATCGGAGTGTTGACCGGAACTTTGACCGGCAAGTTTCACTGCCTAGAGTATCAAGCGGGAGTAGCTATGCAGGAAGTTTGTTTTCAGGCACGGGAACGGGGACAGTGGATGGAAACTTTTCCAGCGACGTCAAAGATTCATCGGCGTCGAAAATATTGTCCTCGCACACGGCCAGGCCAGAAGAGATTGAAGTTGGAGATGATAAGGAAAGCATAGCACAGAAAGCGAAAGAGAGTTATTACCTGCAACTTGCTTTAGCTGCAACGCTTCGTTCTCATGCTAATCTCGCCGGCGATCCTGTGCTTATGGAGGAAGGCATGGTGGAAATTACGGACGCAGAAACTGTTTCTTATCGACTTTGGGTAAGTGGTTGTCTGTCTTACTCCGACAAAATATCAGATGGTTTCTACAATATTCTGGGTATGAACCCGTACCTCTGGGTTATGTGCAATGATTTTGAGGAAGGTAGACGGCTACCTCCTCTGATGTCGCTTAGAACCATTGAACCAAGTGAGACGTCAATGGAGGTGATTCTTGTTGATAGACGTGGGGACTCTCGACTGAAAGAGCTTGAAGACAAAGCACAGGAACTATATTGTGCTTCAGAGAGCACCTTAGTGTTGGTGGAGAAACTAGGAAAGCTTGTTGCGATCTACATGGGGGGCACTTTTCCGGTGGAGCAAGGGGGGTTACACCTCCATTGGAAAGTGGTGAGCAAAAGATTGAGGGAATTTCAGAAATGCATTGTTCTTCCAATTGGTAGTCTTTCTATGGGACTATGCAGGCATCGTGCAATCCTTTTCAAGAAATTGGCAGATTATATAGGTTTGCCATGTCGGATAGCTAGAGGTTGCAAGTACTGTGTTGCAGATCATCGATCCTCTTGCCTTGTCAAAATTGAAGATGACAAGAAATCGTTGAGGGAATATGTAGTTGATTTAGTGGGGGATCCGGGAAATATACATGGTCCAGATTCATCAATTAATGGAGGGTTCCAATCTTCTATGCCTTCACCGCTCCAGATCTCTCATTTGAAAGAGTTTCAAGAACCTTACGTGGAAAGCTATTTCAACAATCAAAATGTCGGGTCAAAGCAAATCTATGGTTTTCCTGAAAATCCTCTACGTTCAGGTTTTGGAGAGTACCAGATGAAAGGGAGAAGGACTTTACATATGAGTTCAGGGGCTGAAACTGATAAATTGGTTGAGCAAGCTTGTATGGGTATGAGATCAACTCAGTTGTGTGTGGAGACAAAAGTGAGCAAGGAGTGTGTGCTTCAGAATCATATAATGCCATCCACTGGGGCTGATGCCTCCGAGGTGTTGAGTTCTGTTGGTGGTGCATCTTTACGTGAAAACAAAGTTGTCATTGAAGAAATATACCAAGAAGAGGCAGTTGTGGCAGGGATTTCACTGAATGAAACCATTAATCCGTCCAAATTAACCTTGTCAACTCAAACTGATTCGAAGGAGGTTGAGGGTAGATCTCAAAATTGTTCAGCATCAACATATCCGAAATATTTGACACTTGAACCATCACTTGCAATGGACTGGCTGGAAATTTCATGGGATGAATTACATATAAAGGAGCGTGTCGGAGCTGGCTCATTTGGTACAGTGCATCGTGCTGAATGGCATGGATCGGATGTTGCTGTCAAGGTTCTAACCGTGCAGGATTTCCATGATGATCAGTTAAAAGAGTTTTTAAGAGAGGTTGCGATAATGAAGCGGGTGCGCCATCCGAATGTGGTACTTTTTATGGGTGCAGTTACAAAGAGACCTCATCTTTCAATAGTGACTGAATACCTGCCCAGGGGTAGTCTATACCGCCTAATCCACAGGCCATCTTCTGGTGAATTGATGGATCAAAGGAAACGATTGCGCATGGCATTGGATGTGGCAAAGGGAATCAACTACCTACATTGTCTCAATCCTCCTATAGTACACTGGGATCTTAAGTCTCCCAACTTGTTGGTTGACAAAAATTGGACGGTGAAGGTTTGTGATTTTGGGTTGTCCAGATTCAAAGCAAACACTTTCATATCGTCGAAATCTGTCGCTGGAACGCCCGAGTGGATGGCTCCAGAATTCCTTCGTGGAGAGCCTTCAAATGAGAAGTCTGATGTCTACAGTTTTGGAGTGATCCTCTGGGAATTAGTCACCATGCAACAACCGTGGAGTGGGCTTGGACCGGCTCAGGTTGTGGGAGCTGTCGCTTTCCAGAATCGAAAGCTTTCTATCCCATCCAGTACTTCTCCGTTGTTGGCTTCCCTTATTGAATCTTGCTGGGCAGATGATCCTGTTCAGCGCCCATCCTTTGCAAGCATAGTTGAGTCCCTAAAAAAATTGCTGAAATCTCCACAGCAGTTGATAGCCATGGGAGGAACGTGA 2775 45.87 MPHRTTYFFPRQFPDRGFDSASTSKHILDHEKKINKDTFSTESDAKPTPRPARDFSVTKSSAVSDLFTGDKAQSNKKLPAFYDWLVDKKATRSATAHVKTWLSNCDEDRELLLPPPTSEPEHDTTSVKDRSVDRNFDRQVSLPRVSSGSSYAGSLFSGTGTGTVDGNFSSDVKDSSASKILSSHTARPEEIEVGDDKESIAQKAKESYYLQLALAATLRSHANLAGDPVLMEEGMVEITDAETVSYRLWVSGCLSYSDKISDGFYNILGMNPYLWVMCNDFEEGRRLPPLMSLRTIEPSETSMEVILVDRRGDSRLKELEDKAQELYCASESTLVLVEKLGKLVAIYMGGTFPVEQGGLHLHWKVVSKRLREFQKCIVLPIGSLSMGLCRHRAILFKKLADYIGLPCRIARGCKYCVADHRSSCLVKIEDDKKSLREYVVDLVGDPGNIHGPDSSINGGFQSSMPSPLQISHLKEFQEPYVESYFNNQNVGSKQIYGFPENPLRSGFGEYQMKGRRTLHMSSGAETDKLVEQACMGMRSTQLCVETKVSKECVLQNHIMPSTGADASEVLSSVGGASLRENKVVIEEIYQEEAVVAGISLNETINPSKLTLSTQTDSKEVEGRSQNCSASTYPKYLTLEPSLAMDWLEISWDELHIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPSSGELMDQRKRLRMALDVAKGINYLHCLNPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFISSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLGPAQVVGAVAFQNRKLSIPSSTSPLLASLIESCWADDPVQRPSFASIVESLKKLLKSPQQLIAMGGT 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1823102 1831390 + MELO3C003518.2.1 Cme04g00232 324493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00232 924 Gene3D Transferase(Phosphotransferase) domain 1 733 920 - -
Cme04g00232 924 MobiDBLite consensus disorder prediction 29 59 - -
Cme04g00232 924 Pfam Protein tyrosine and serine/threonine kinase 654 908 IPR001245 GO:0004672|GO:0006468
Cme04g00232 924 PANTHER SERINE/THREONINE-PROTEIN KINASE CTR1-LIKE ISOFORM X1 109 922 - -
Cme04g00232 924 CDD STKc_MAP3K-like 660 908 - -
Cme04g00232 924 Pfam Ethylene-responsive protein kinase Le-CTR1 241 449 - -
Cme04g00232 924 SUPERFAMILY Protein kinase-like (PK-like) 628 907 IPR011009 -
Cme04g00232 924 PRINTS Tyrosine kinase catalytic domain signature 728 741 IPR001245 GO:0004672|GO:0006468
Cme04g00232 924 PRINTS Tyrosine kinase catalytic domain signature 769 787 IPR001245 GO:0004672|GO:0006468
Cme04g00232 924 PRINTS Tyrosine kinase catalytic domain signature 835 857 IPR001245 GO:0004672|GO:0006468
Cme04g00232 924 PRINTS Tyrosine kinase catalytic domain signature 879 901 IPR001245 GO:0004672|GO:0006468
Cme04g00232 924 Gene3D Phosphorylase Kinase; domain 1 647 731 - -
Cme04g00232 924 MobiDBLite consensus disorder prediction 109 137 - -
Cme04g00232 924 ProSiteProfiles Protein kinase domain profile. 654 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00232 924 ProSitePatterns Protein kinases ATP-binding region signature. 660 681 IPR017441 GO:0005524
Cme04g00232 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 775 787 IPR008271 GO:0004672|GO:0006468
Cme04g00232 924 SMART serkin_6 654 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00232 924 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 109 922 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00232 Cme-Chr4:1823102 Cme08g01227 Cme-Chr8:8661616 3.17E-64 dispersed
Cme12g01538 Cme-Chr12:22845384 Cme04g00232 Cme-Chr4:1823102 6.15E-52 dispersed
Cme04g00232 Cme-Chr4:1823102 Cme04g02435 Cme-Chr4:30989682 5.67E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64783 PF07714 PK_Tyr_Ser-Thr 5.30E-64 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00232 - - csv:101204522 1789.24