Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00238 ATGGAAAACTTAGATGGAAAGAGTTCAGATTCTTCGCAATGCGTTCGCGTTGCTGTTAATATTAGACCTTTGATTACACCGGAGCTAATGGTTGGATGTACGGATTGTATTACGGTTGTGCCTGGCGAGCCTCAGGTTCAAATTGGGTCGCATATATTCACTTACGATAATGTGTATGGTAGTGCTGGATCGCCATCTTATGCATTATACGACGACTGTGTTGCTCCATTGGTGGAGGCATTATTTCAGGGTTATAATGCTACTGTTCTTGCTTATGGACAGACGGGGTCTGGAAAGACCTACACAATGGGGACAAATTATAGCGGCGAAGGAACCAATGATGGAGTAATACCTAAAGTCATGGAAAAAATATTTAAAAAGGTCGAGGCAATGAAGGATTCGACAGAGTTCTTGATCAGAGTATCATTTATTGAGATATTCAAGGAAGAAGTTTTTGATTTGCTTGATGCAAGTACTTGCGTTAATAATACAAAGGGTGAAGGGACAAAGCCTTTTGCTCCTCCACGAGTTCCAATACAAATACGAGAAACTGTAAATGGTGGAATTACGCTTGTTGGTGTCACTGAGGCCGAAGTTCGCACCACAGAAGAAATGACATCTTACTTGTCTCGTGGTTCATTAGCACGTGCAACTGGAAGTACCAACATGAATAGTCAGTCAAGTCGATCACATGCCATCTTTACTATTACTATGGAGCAAAAGAAAAAGCTTGGGCAAGGCACGTCTCATGATGATACATGCGATGACATTCTATGTGCAAAGCTCCATTTGGTGGATCTTGCTGGTTCTGAAAGAGCAAAACGAACAGGTGCCGATGGCATGCGCTTTAAAGAAGGTGTTCATATCAACAAAGGCCTTTTGGCACTCGGCAATGTCATAAGTGCACTGGGAGATGAGAAGAAACGAAGAGAAGGATGTCATGTTCCCTATCGTGATAGCAAGTTAACGCGTTTGCTACAGGATTCTCTCGGAGGCAACAGCAGAACGGTGATGATTGCTTGTGTGAGTCCTGCCGACTCAAATGCAGAAGAGACCCTAAATACGCTGAAATATGCCAATCGTGCTCGCAATATTCAAAATAAAGCAGTCATCAACCGAGATCCTGTAGGAGCTCAAATACAGAAAATGCGAAGTCAAATTGAGCAGTTGCAAGCTGAGCTTCTGTTCTATCGCGGTGATGCAGGTTTACCGTATGAAGAGCTACAGATTCTAAAGCACAAAATATCATTGCTCGAAGCAAGCAATGGTGAGTTGTTGCGGGAACTTCAAGAACGTCGAGTCACTTGTGACCATCTGTCTCAGCGTGCTATTGATGCTCAGGTTGAAAAAGACAAATTTGCCATGATAATTGAATCTGTGCGGAATGGAAAATCTTTAGATGAGATTGAATCCAACTACGATAAGGATTGTGAGTTGATTAAGAGTTATGTTTCGAAAATTCAAGAGCTAGAAGGCGAGGTACTGAGATTGCAAAGCTTTAAGAGTTCAAAACACAGTCAATATGCTGATCTTGCGGAGTCTGATGATGATAGGCCCCAGTCTGGTAACATCTTATTTCCATGTTCAAATGAGTATTCGTCGGAATATGATCCCAAAGCTGGAGATATTCCAGATGGAATTGAAGATCACGAAAAGGAGCTTGAACATTCGACAATGCAAGAAAGACTAGACAGAGAGCTAAAAGAATTGGATAAGAAACTTGAGCAGAAGGAGGCTGAAATGAAACGGTTTGCCGGTACGGATACCTCTGTTCTTAAACAACATTATGAAAAAAAGGTTCATGAATTGGAACAAGAAAAGAGAGCTTTACAGAAAGAGATCGAGGAACTTAGATGTAATCTTTCAAACATATCTTCTACATCTGATGATGGGGCTCAAAAGTTGAAGCAAGAATATCTTCAGAAATTGAATTTCTTGGAGACTCAGGTCTCGGAGTTGAAGAAGAAACAAGACGCTCAAGCTCAACTATTGAGACAGAAGCAAAAGAGTGACGAGGCAGCAAAAAGATTACAGGATGAGATCCACAGAATTAAGACCCAGAAGGTTCAACTTCAACACAAGATTAAACAGGAATCTGAGCAATTTAGATCATGGAAGGCTTCAAGAGAGAAGGAAGTTCTCCAGCTGAAGAAGGAGGGTAGGAGAAACGAATATGAGATGCACAAGCTCTTAGCTTTGAATCAAAGACAGAAGATGGTCTTGCAACGAAAGACAGAAGAAGCTGCCCAGGCAACAAAAAGGCTGAAAGAGCTTTTAGAATCTCGGAAGGCAGCACGTGAAACTTCCAGTGGGGGATCAAATGGTCCTGGAATTCAGGCACTAATGCAGAATATTGAGCATGAGCTTGAAGTTACGGTTCGGGTGCATGAAGTTCGTTCTGAATATGAACGTCAAATGGAAGAGAGGTCTAAGATGGCCAAAGAATTGGCCAAGCTTAAGGAGGAGGAACTGAACAGAGGATCGAATTTAAGTGACTGTACTCAAACAATGTCACCTGGTGCAAGAAATTCAAGAATCTTTGCCCTTGAAAACATGCTTGCTACATCATCTAGCTCTCTGGTTTCTATGGCCTCACATTTGTCAGAGGCAGAAGAGCGTGAACGCATTCTTGGTGGTAGGGGACGTTGGCATCAAGTTCGCTCTCTAGCCGATGCAAAGAATATTATGAATTTTTTGATGAATTTAGCATCTTCTTCAAGGTGTTTGCTATGGGATAAAGAGTTTGCTTCAAGAGAGAAGGATTCGGAAATTAGGGAACTGAAACAAAAAATAGTAAATCTTAGCGGAATGCTAAAAAAATCAGAAGCACAGAAGGCAGAACTTATTCATGAGAACTCAGCTTTGAAAAGATATTCTCAAGGGCATAACTATGATCTACGAAAACAGGAGCATCGAAACTCTGTTATCATACAGGCAGACATGGATACCTCGGAATCAGATTATGCAAATTATAGTTCAGATGGCGATGATGATAATTATGATTGGGAGAGATCCATGAAACGAAGATTGAATAGAAAAAAAACCTCTAAAACCAAGGGTCGTGTAAGTATGGCTGTCTCAAATGGCACAGATAGTAGAGAGTTCAACTTGGATAGTTCTGGCGATGGCGGCATAATTCGCGGGAATGAATCTACGGCTACTTCCGTTGTTTGTTGTACTTGTAGCAAATTTTCTTCTTGCAAGACATCAAAGTGCCAATGCAGAGCGAATGGTGGTGCTTGTGGCGCGTCATGTGGTTGCATACCATCGAAGTGTTCAAACAGAGGCAGTAAAAGTGACCGGGACGCTTCAATGCAACCGGATTCATTCAAGGATGTTCGAAATGGTACGGAAAACGAAGAAACCGATGAGGAAAATCAGGACCTTGTTTCTCGTGGTGCTAGGTTACTTCAAAATGCATTGGCTGAGAGGCCAAGTGATGCTCCTCCTCCTCCTACTGCTGAAGATGGTGGTGCAAAAAGAAAGCCTCTATCAGACATCGGAAACACATTGGTAAAATCAAAGGCAAACAAGCCAAACCAAAGAAAGAAATGGCGAAAATCTACAATTCAACTGATTCCAACCCCACAACAAGCGTCGTCCGAACCCGAAAAACCCTCGGCCACCGAGAAGACAGAGAATGACCCAAATGAGGTTGTCAACATCCCGTTGAAACTTCCCCGAGCTATGCGATCCGCTGCCGTCGTCAATGGCGGGAACAACAACCTACTGAGAGAGAGAAACGCCGATCAGCCGGAAGATTCGATCGGCGGCAACAAAGGACATGAACTTGTTGTTCCGAAAAGAGTGGATGAGAAAGAGAATTGCAACCGTTAA 3837 42.51 MENLDGKSSDSSQCVRVAVNIRPLITPELMVGCTDCITVVPGEPQVQIGSHIFTYDNVYGSAGSPSYALYDDCVAPLVEALFQGYNATVLAYGQTGSGKTYTMGTNYSGEGTNDGVIPKVMEKIFKKVEAMKDSTEFLIRVSFIEIFKEEVFDLLDASTCVNNTKGEGTKPFAPPRVPIQIRETVNGGITLVGVTEAEVRTTEEMTSYLSRGSLARATGSTNMNSQSSRSHAIFTITMEQKKKLGQGTSHDDTCDDILCAKLHLVDLAGSERAKRTGADGMRFKEGVHINKGLLALGNVISALGDEKKRREGCHVPYRDSKLTRLLQDSLGGNSRTVMIACVSPADSNAEETLNTLKYANRARNIQNKAVINRDPVGAQIQKMRSQIEQLQAELLFYRGDAGLPYEELQILKHKISLLEASNGELLRELQERRVTCDHLSQRAIDAQVEKDKFAMIIESVRNGKSLDEIESNYDKDCELIKSYVSKIQELEGEVLRLQSFKSSKHSQYADLAESDDDRPQSGNILFPCSNEYSSEYDPKAGDIPDGIEDHEKELEHSTMQERLDRELKELDKKLEQKEAEMKRFAGTDTSVLKQHYEKKVHELEQEKRALQKEIEELRCNLSNISSTSDDGAQKLKQEYLQKLNFLETQVSELKKKQDAQAQLLRQKQKSDEAAKRLQDEIHRIKTQKVQLQHKIKQESEQFRSWKASREKEVLQLKKEGRRNEYEMHKLLALNQRQKMVLQRKTEEAAQATKRLKELLESRKAARETSSGGSNGPGIQALMQNIEHELEVTVRVHEVRSEYERQMEERSKMAKELAKLKEEELNRGSNLSDCTQTMSPGARNSRIFALENMLATSSSSLVSMASHLSEAEERERILGGRGRWHQVRSLADAKNIMNFLMNLASSSRCLLWDKEFASREKDSEIRELKQKIVNLSGMLKKSEAQKAELIHENSALKRYSQGHNYDLRKQEHRNSVIIQADMDTSESDYANYSSDGDDDNYDWERSMKRRLNRKKTSKTKGRVSMAVSNGTDSREFNLDSSGDGGIIRGNESTATSVVCCTCSKFSSCKTSKCQCRANGGACGASCGCIPSKCSNRGSKSDRDASMQPDSFKDVRNGTENEETDEENQDLVSRGARLLQNALAERPSDAPPPPTAEDGGAKRKPLSDIGNTLVKSKANKPNQRKKWRKSTIQLIPTPQQASSEPEKPSATEKTENDPNEVVNIPLKLPRAMRSAAVVNGGNNNLLRERNADQPEDSIGGNKGHELVVPKRVDEKENCNR 1278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1868965 1877843 - MELO3C003524.2.1 Cme04g00238 324499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00238 1278 PANTHER KINESIN-LIKE PROTEIN KIN-4C 8 1259 - -
Cme04g00238 1278 ProSitePatterns Kinesin motor domain signature. 260 271 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cme04g00238 1278 MobiDBLite consensus disorder prediction 1020 1037 - -
Cme04g00238 1278 SMART kinesin_4 12 373 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme04g00238 1278 Coils Coil 795 822 - -
Cme04g00238 1278 Pfam Kinesin motor domain 47 365 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme04g00238 1278 Coils Coil 556 587 - -
Cme04g00238 1278 MobiDBLite consensus disorder prediction 1093 1129 - -
Cme04g00238 1278 Coils Coil 380 400 - -
Cme04g00238 1278 Coils Coil 636 701 - -
Cme04g00238 1278 CDD KISc_KIF4 14 366 - -
Cme04g00238 1278 Gene3D Kinesin motor domain 9 398 IPR036961 -
Cme04g00238 1278 MobiDBLite consensus disorder prediction 1011 1043 - -
Cme04g00238 1278 ProSiteProfiles Kinesin motor domain profile. 14 365 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme04g00238 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 399 IPR027417 -
Cme04g00238 1278 MobiDBLite consensus disorder prediction 1095 1129 - -
Cme04g00238 1278 MobiDBLite consensus disorder prediction 1186 1205 - -
Cme04g00238 1278 Coils Coil 924 944 - -
Cme04g00238 1278 MobiDBLite consensus disorder prediction 1141 1219 - -
Cme04g00238 1278 MobiDBLite consensus disorder prediction 1264 1278 - -
Cme04g00238 1278 MobiDBLite consensus disorder prediction 1241 1278 - -
Cme04g00238 1278 Coils Coil 593 627 - -
Cme04g00238 1278 PRINTS Kinesin heavy chain signature 84 105 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme04g00238 1278 PRINTS Kinesin heavy chain signature 221 238 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme04g00238 1278 PRINTS Kinesin heavy chain signature 261 279 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme04g00238 1278 PRINTS Kinesin heavy chain signature 315 336 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme04g00238 1278 Coils Coil 741 768 - -
Cme04g00238 1278 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 8 1259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00238 - - - csv:101205410 2316.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00238 Cme-Chr4:1868965 Cme03g02122 Cme-Chr3:28438833 8.96E-70 dispersed
Cme02g00160 Cme-Chr2:1202152 Cme04g00238 Cme-Chr4:1868965 9.19E-34 transposed
Cme02g00988 Cme-Chr2:14602319 Cme04g00238 Cme-Chr4:1868965 4.71E-60 transposed
Cme03g01871 Cme-Chr3:26935080 Cme04g00238 Cme-Chr4:1868965 1.01E-22 transposed
Cme04g02382 Cme-Chr4:30545871 Cme04g00238 Cme-Chr4:1868965 3.32E-70 transposed
Cme04g02619 Cme-Chr4:32076722 Cme04g00238 Cme-Chr4:1868965 2.42E-47 transposed
Cme06g00871 Cme-Chr6:5987374 Cme04g00238 Cme-Chr4:1868965 7.96E-58 transposed
Cme07g00330 Cme-Chr7:2108440 Cme04g00238 Cme-Chr4:1868965 0 transposed
Cme08g00230 Cme-Chr8:1537246 Cme04g00238 Cme-Chr4:1868965 8.68E-20 transposed
Cme08g02374 Cme-Chr8:30624789 Cme04g00238 Cme-Chr4:1868965 8.05E-65 transposed
Cme09g01562 Cme-Chr9:20594822 Cme04g00238 Cme-Chr4:1868965 2.00E-30 transposed
Cme11g00502 Cme-Chr11:5029012 Cme04g00238 Cme-Chr4:1868965 1.51E-65 transposed
Cme12g00235 Cme-Chr12:2667714 Cme04g00238 Cme-Chr4:1868965 6.89E-71 transposed
Cme03g01807 Cme-Chr3:26466625 Cme04g00238 Cme-Chr4:1868965 8.49E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g516 . . . . . . . Bma01g02586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00208 . . . . . . . . . . . . . . . . . . Bhi09g02497 . . . . Mch11g0708 . . . . . . . . . . . Cme04g00238
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009556 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00238 Cme_Chr04 FPKM 24.988766 26.014214 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0