Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00239 AAGAGAAGAAAAGTTTGGAAATGGATCGAAGAAGGTAAGGGTGAATCCATTTTTCTCATCTTTCGTTACAATTTTTGGATCAGCAAAAATTCAAGAGCTTATGCGATTGCAAAATCAGGACCTTTGATTTTATTTCTTCCCAAACAAACCCGTCAGTTTCGGGAAGAATCAGTGGGAATTTTGATGGAAAATTCCAATAGGGTTGAAGCAGAACGCTTGCTTGGAATCGCTGAAAAACTCTTGCACAATCGTGATTTCACCGGCTCTAAAGATTTCGCCATCTTAGCTCAAGAAACCGAGCCACTTTTGGATGGCTCTGATCAGATCCTAGCTGTTGCCGATGTGTTATTGGCATCGGAGAAGCTAATCAACAACCAAAATGATTGGTATTCGATTCTTCAAATTGAACGGCGATCTGATGATTCAGATCTCATCAAGAAGCAGTATCGGAAACTTGCGTTACTTCTACATCCCGATAAGAACAAATTTCCTTTTGCTGATCAAGCTTTCAAGTTGGTTGCGGATTCGTGGGCTGTATTGTCCGACAGTACGAAGAAATCGCTTTACGATAACGAGCTTAACCTTTATGCTAAGATCGATTTGTCTCATCAGAACAAATTGCCAGTGCGCCGGAGCCAACGATCTGGTGGTAAGAAACAGCAAGAATTTGAGAGTAACGACGGCGCCAACGCCGATGACGATCAATCTCCAAATCAGCGGCTGAAATTATTGAGTTTCTGGACAGCTTGTCCTTACTGTTACGTGTTATTTGAGTACCCTAGGGTTTATGAGGGTTGCTGTTTGCGATGTCAGAATTGCAAGAGGGCATTTCAAGCGGTGTTGCTTCCGTCGCTTCCGCCGCTCGTTCAGGGCCAAGAAGCCTATTATTGCTGCTGGGGTTTTTTTCCGATGGGATTTGCAGCTCAACAGAACGAGAAAAGTGGGAAGGGCAGCGAAACAGCCCCACCAACAACGGCGTTCCCCAATTGGATGCCCCCAATATTTTCTAACAAGCCTCAAGAAACTAGTAGAAATGGACAAACGGCAGCCCCGGTGGCGGGGGAGGCGACTCCGACTGGTAGAGAGGGAGTGGTGGTGAATGCTCCTCCCATTGTTAGGGCTCCCATAGTGCGTGGCACTGGCACAGGTAAGAAGAGGGGCAGGCCACGGAAGAATCCGATTGCAGCCTAA 1191 46.18 KRRKVWKWIEEGKGESIFLIFRYNFWISKNSRAYAIAKSGPLILFLPKQTRQFREESVGILMENSNRVEAERLLGIAEKLLHNRDFTGSKDFAILAQETEPLLDGSDQILAVADVLLASEKLINNQNDWYSILQIERRSDDSDLIKKQYRKLALLLHPDKNKFPFADQAFKLVADSWAVLSDSTKKSLYDNELNLYAKIDLSHQNKLPVRRSQRSGGKKQQEFESNDGANADDDQSPNQRLKLLSFWTACPYCYVLFEYPRVYEGCCLRCQNCKRAFQAVLLPSLPPLVQGQEAYYCCWGFFPMGFAAQQNEKSGKGSETAPPTTAFPNWMPPIFSNKPQETSRNGQTAAPVAGEATPTGREGVVVNAPPIVRAPIVRGTGTGKKRGRPRKNPIAA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1883858 1887994 + MELO3C003525.2.1 Cme04g00239 324500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00239 396 Pfam DnaJ domain 128 190 IPR001623 -
Cme04g00239 396 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 63 390 - -
Cme04g00239 396 ProSitePatterns Nt-dnaJ domain signature. 170 189 IPR018253 -
Cme04g00239 396 ProSiteProfiles dnaJ domain profile. 128 193 IPR001623 -
Cme04g00239 396 PRINTS DnaJ domain signature 130 148 IPR001623 -
Cme04g00239 396 PRINTS DnaJ domain signature 165 185 IPR001623 -
Cme04g00239 396 PRINTS DnaJ domain signature 149 164 IPR001623 -
Cme04g00239 396 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 63 390 - -
Cme04g00239 396 MobiDBLite consensus disorder prediction 207 236 - -
Cme04g00239 396 MobiDBLite consensus disorder prediction 312 331 - -
Cme04g00239 396 MobiDBLite consensus disorder prediction 337 396 - -
Cme04g00239 396 MobiDBLite consensus disorder prediction 337 352 - -
Cme04g00239 396 CDD DnaJ 128 182 IPR001623 -
Cme04g00239 396 SUPERFAMILY Chaperone J-domain 123 193 IPR036869 -
Cme04g00239 396 SMART dnaj_3 127 185 IPR001623 -
Cme04g00239 396 Gene3D DnaJ domain 117 212 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00239 - - - csv:101205646 652.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00203 Cme-Chr1:1451743 Cme04g00239 Cme-Chr4:1883858 1.14E-23 transposed
Cme01g00546 Cme-Chr1:4071899 Cme04g00239 Cme-Chr4:1883858 2.36E-39 transposed
Cme02g00143 Cme-Chr2:1071792 Cme04g00239 Cme-Chr4:1883858 8.36E-39 transposed
Cme02g02069 Cme-Chr2:26659464 Cme04g00239 Cme-Chr4:1883858 5.60E-33 transposed
Cme06g02437 Cme-Chr6:31420025 Cme04g00239 Cme-Chr4:1883858 1.81E-25 transposed
Cme07g01940 Cme-Chr7:24598189 Cme04g00239 Cme-Chr4:1883858 1.23E-37 transposed
Cme09g01971 Cme-Chr9:23609620 Cme04g00239 Cme-Chr4:1883858 2.42E-36 transposed
Cme11g01970 Cme-Chr11:27700433 Cme04g00239 Cme-Chr4:1883858 1.70E-32 transposed
Cme11g02097 Cme-Chr11:28602320 Cme04g00239 Cme-Chr4:1883858 9.90E-11 transposed
Cme04g00239 Cme-Chr4:1883858 Cme08g00731 Cme-Chr8:4882071 8.95E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g508 . Blo12g00731 . Bda03g00457 . Bpe04g00418 Bma04g00432 . . . Cma01g01645 Cma09g00593 . . . Cpe06g00454 . . . . . . . . . . . . . . . Cone6ag1532 . . . Lsi04g02278 Csa03g04491 Chy04g00209 . . . . . . . . . Sed14g1000 Cmo01g01695 Cmo09g00579 . . . Car09g00524 . . Bhi09g02496 Tan01g3850 Cmetu01g2584 . Hepe01g2168 Mch11g0707 . Cla11g01422 Cam11g1478 Cec11g1508 Cco11g1504 Clacu11g1639 Cmu11g1457 Cre11g1875 . . . Cme04g00239
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g00239 . 64 394 SUVH1/3-interacting DNAJ domain-containing protein superfamily AT2G01710 52.8 1.8e-85 313.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009723 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00239 Cme_Chr04 FPKM 14.058771 14.684258 18.119669 17.372078 28.607222 26.546062 29.636473 21.76469 20.043598 21.801981