Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00242 ATGGCTTGCAAGTTCTTGTTTCCTCCTTTATTTCTTATACTCTTAACCCTTTTCACCTCTTCATTTGCTTCAGATGATTCTCTCACTAATATTTTCCCTACCAAAGCCATTTGCAAACTGACCTCAAATCCTTCTTACTGCATCACTGTGCTTAAACAATCCAGAGATGGTAATATCTACGACTCTGGCCGGTTCTCAATTCGTCGTTCTTTATCTAAAGCCTCTAGATTCCTTGACTTGATTGAGAAGCATCTTCAGAACTCTTCAACTCTACCAAAATCCATCATCGGAGCTCTCAAAGATTGTCAGTACCTTGCTCAACTGAATATGAATTTCTTGTCTAATTCGTTTCGGGCTGTTAATGGCACTGATAGAAAGCTAACTTACTCAAAAGCTGATTATATCCAGAGTCTTCTTAGTGCCATCTTAACCAACATTGATACTTGTCTTGATGGTCTAAACACTGTAGCCTCAGGTTCTAGTTTGGAGAAAGATCTATTAGCCCCACTTATTGATTGTACTAAATCGTACAGTCTTTCTCTTGATCTTTTTACAAAGGGTTGGGTGCCTAGGTGGAATAGAAACAGAACACTAGAGCACCCTGGGAAAAAACACCTGCAGTTTAGGAAAGGACCGTTGCCATTGAGAATGTCGAGACACGACCGTGCTGTTTACAACTCGGTGGCAAATCGGAGAAAGCTTTCGTCTTCTTCTGATGATGGAGTTTTGGTTAATGGTATTGCAGTTGTGAGTCAAGATGGTGAAGGAGACTTCCTTAACATCACAGATGCTATTAATGCAGCTCCAAATAACTCTCTTGCTGCCAATGGCTACTTCTTGATTTACATTACGGCTGGTGTTTATCAAGAGTATGTGTCTGTTCCTTCAAAGAAGAAGTACTTGCTGATGATTGGAGATGGTATAAATCAAACTATTATCACAGGCAACCGGAGCGTCGCTGACGGATGGACGACTTTCAACAGTGCAACTTTTGCTGTAGCAGCAGAAGGATTCATGGCCGTAAACATAACCTTCCAAAACACAGCTGGAGCAATCAAAGGCCAAGCAGTTGCATTAAGAAGTGGAGCTGATATGTGCGTTTTTTACTCCTGCAGTTTTGAAGGTTATCAAGACACCTTATACACTCATTCCCTCAGGCAATTCTTTAGAGAATGTGACATTTATGGCACTGTTGACTTCATTTTTGGAAATGCTGCTGTTGTCTTCCAAAACTGTAACATATATCCCCGTCTCCCCGGTCCCCGTCAGGCCAACATGATCACCGCTCAAGGCCGATCCGATCCTAACCAAAACACCGGGACTTCGATCCACAACTGCACAATCCAAGCCACCCCCGATTTGGCTGCAAGTAGTAGTCATATGAACAAGACATATTTGGGAAGGCCATGGAAACAATACTCAAGAACAGTGTATATGCAAACATTTATTGATGGATTTGTAAATCCTAAAGGTTGGGATCCATGGTCAGGGGAATACTTGAGCACATTATATTATGGAGAGTATAATAATACAGGAGGTGGATCAGATACAAAGAATAGAGTTATTTGGCCAGGTTATCATGTGATTAATAATGCAACTGATGCTGCTAATTTTACAATTTCAAACTTCTTGGTTGGGGATGTGTGGTTGCCTCCAACTGGTGTGCCTTACACCGGAGGTTTTGTATAA 1689 41.44 MACKFLFPPLFLILLTLFTSSFASDDSLTNIFPTKAICKLTSNPSYCITVLKQSRDGNIYDSGRFSIRRSLSKASRFLDLIEKHLQNSSTLPKSIIGALKDCQYLAQLNMNFLSNSFRAVNGTDRKLTYSKADYIQSLLSAILTNIDTCLDGLNTVASGSSLEKDLLAPLIDCTKSYSLSLDLFTKGWVPRWNRNRTLEHPGKKHLQFRKGPLPLRMSRHDRAVYNSVANRRKLSSSSDDGVLVNGIAVVSQDGEGDFLNITDAINAAPNNSLAANGYFLIYITAGVYQEYVSVPSKKKYLLMIGDGINQTIITGNRSVADGWTTFNSATFAVAAEGFMAVNITFQNTAGAIKGQAVALRSGADMCVFYSCSFEGYQDTLYTHSLRQFFRECDIYGTVDFIFGNAAVVFQNCNIYPRLPGPRQANMITAQGRSDPNQNTGTSIHNCTIQATPDLAASSSHMNKTYLGRPWKQYSRTVYMQTFIDGFVNPKGWDPWSGEYLSTLYYGEYNNTGGGSDTKNRVIWPGYHVINNATDAANFTISNFLVGDVWLPPTGVPYTGGFV 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1915220 1922353 + MELO3C003529.2.1 Cme04g00242 324503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00242 562 CDD PMEI-like_3 36 188 - -
Cme04g00242 562 PANTHER PECTINESTERASE 12 560 - -
Cme04g00242 562 PANTHER PECTINESTERASE 12 560 - -
Cme04g00242 562 Pfam Plant invertase/pectin methylesterase inhibitor 35 163 IPR006501 GO:0004857
Cme04g00242 562 Pfam Pectinesterase 248 547 IPR000070 GO:0030599|GO:0042545
Cme04g00242 562 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Cme04g00242 562 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 157 IPR006501 GO:0004857
Cme04g00242 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 186 IPR035513 -
Cme04g00242 562 SMART PMEI_2 29 183 IPR006501 GO:0004857
Cme04g00242 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 186 IPR035513 -
Cme04g00242 562 Gene3D - 247 562 IPR012334 -
Cme04g00242 562 SUPERFAMILY Pectin lyase-like 245 560 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02237 Cme-Chr1:31038204 Cme04g00242 Cme-Chr4:1915220 0 dispersed
Cme04g00242 Cme-Chr4:1915220 Cme06g00898 Cme-Chr6:6304129 1.03E-132 dispersed
Cme11g00219 Cme-Chr11:2579673 Cme04g00242 Cme-Chr4:1915220 3.74E-112 dispersed
Cme12g01639 Cme-Chr12:23536915 Cme04g00242 Cme-Chr4:1915220 1.58E-89 dispersed
Cme04g00242 Cme-Chr4:1915220 Cme10g00186 Cme-Chr10:1255016 1.28E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00242 K01051 - csv:101205879 1075.46