Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00247 ATGGCGTCCGCCATCCCTGAAAACCTAACAAGGGAGCAGTATGTTTACCTATCCAAGCTTTCCGAGCAAGCCGAGCGCTACGAGGAAATGGTCAACTTCATGCAAAAGCTTGTATTGACCTCCACTCCTGCCTCTGAGCTCACTGTCGAGGAACGCAATCTCCTTTCCGTTGCATACAAGAACGTGATCGGTTCTCTCCGAGCGGCTTGGCGCATCGTATCCTCCATTGAACAGAAGGAAGAAGGAAGGAAGAACGAAGATCATGTTGTCCTCGTCAAAGATTATAGATCCAAGGTCGAAACCGAACTCACCGAGGTCTGCGCCAATATTTTGAAGCTTTTGGACTCCAATCTCATACCATCTTCGGCCTCTGGTGAATCTAAGGTGTTCTACTTAAAGATGAAGGGAGATTACCATAGGTATTTGGCTGAGTTTAAGATTGGGGAGGAGAGGAAGTCCGCCGCCGAGGATACCATGCTAGCTTACAAGGCTGCTCAGGATATTGCAGTTGCCGATCTTGCACCAACGCACCCAATCAGGCTGGGCCTAGCACTAAATTTCTCTGTTTTTTACTTTGAGATCCTGAACCAGTCTGATAAAGCTTGTAGCATGGCCAAGCAGGCATTTGAAGAAGCGATTGCGGAATTGGACACATTAGGTGAGGAATCATACAAGGATAGCACCCTGATCATGCAACTCTTAAGAGACAATCTCACCCTTTGGACTTCGGATTCGCAGGACCAGTTAGACGAGCCATAG 759 47.96 MASAIPENLTREQYVYLSKLSEQAERYEEMVNFMQKLVLTSTPASELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEDHVVLVKDYRSKVETELTEVCANILKLLDSNLIPSSASGESKVFYLKMKGDYHRYLAEFKIGEERKSAAEDTMLAYKAAQDIAVADLAPTHPIRLGLALNFSVFYFEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDSQDQLDEP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1948190 1952150 + MELO3C003536.2.1 Cme04g00247 324508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00247 252 PRINTS 14-3-3 protein zeta signature 46 75 IPR000308 -
Cme04g00247 252 PRINTS 14-3-3 protein zeta signature 95 119 IPR000308 -
Cme04g00247 252 PRINTS 14-3-3 protein zeta signature 126 148 IPR000308 -
Cme04g00247 252 PRINTS 14-3-3 protein zeta signature 161 187 IPR000308 -
Cme04g00247 252 PRINTS 14-3-3 protein zeta signature 188 214 IPR000308 -
Cme04g00247 252 PRINTS 14-3-3 protein zeta signature 215 244 IPR000308 -
Cme04g00247 252 SUPERFAMILY 14-3-3 protein 10 244 IPR036815 -
Cme04g00247 252 Coils Coil 17 37 - -
Cme04g00247 252 ProSitePatterns 14-3-3 proteins signature 2. 224 243 IPR023409 -
Cme04g00247 252 PIRSF 14-3-3 6 251 IPR000308 -
Cme04g00247 252 SMART 1433_4 11 251 IPR023410 -
Cme04g00247 252 Gene3D - 2 251 IPR036815 -
Cme04g00247 252 PANTHER BNAC02G00320D PROTEIN 8 248 - -
Cme04g00247 252 PANTHER 14-3-3 PROTEIN 8 248 IPR000308 -
Cme04g00247 252 Pfam 14-3-3 protein 19 242 IPR023410 -
Cme04g00247 252 ProSitePatterns 14-3-3 proteins signature 1. 52 62 IPR023409 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00742 Cme-Chr1:7293400 Cme04g00247 Cme-Chr4:1948190 6.25E-25 dispersed
Cme03g01852 Cme-Chr3:26800080 Cme04g00247 Cme-Chr4:1948190 3.78E-138 dispersed
Cme04g00247 Cme-Chr4:1948190 Cme04g00274 Cme-Chr4:2168966 4.32E-139 dispersed
Cme04g01691 Cme-Chr4:24209734 Cme04g00247 Cme-Chr4:1948190 3.04E-23 dispersed
Cme03g01784 Cme-Chr3:26329881 Cme04g00247 Cme-Chr4:1948190 9.99E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00247 K06630 - csv:101206352 480.33