Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00248 ATGGAGGACTTCGCCTTTCACGATGGCAACGTATGCGCTTTGCTTGAGAGCAGGCACATCAACTTTCGTCAAGATCCCACCTATGGTTTGCAGATGCACTCATCATTCATCCAAAGACTCTCCCAGGAAAAGGAACTGGAGGGGCACCAGGGGTGTGTTAATGCAGTGGCCTGGAATTCTCGTGGTTCGCTTTTGATATCTGGATCAGATGACACTCGAATAAACATCTGGAGCTATTCTGGTCGAAAGCTATTGCACTCTGTGGATACTGGGCATTCCGCAAACATATTTTGTACAAAATTTGTTCCTGAAACGTCTGATGAGCTTGTGGTCTCGGGAGCCGGGGATGCAGAGGTTCGGTTGTTTAATTTATCTCGCTTAAAAGGGAGAGGACAAGATGATCATCCCATACCCTCATCAGCTTTGTATCGGTGTCACACCAGAAGAGTAAAAAAATTAGCTGTTGAAATAGGAAATCCAAATGTAGTATGGAGTGCTAGTGAGGATGGGACTCTTAGACAGCACGACTTTCGAGAGGGCATGTCTTGTCCTCCTGATGGAGCTTCTCACCAAGAATGCCACAATGTTCTTCTTGATTTGCGGTGTGGAGCAAAGAGGTCATTGGCTGATCCTCCCCGACAAACCCTTGCTTTGAAATCCTGTGATATTAGTTCCACTAGGCCTCATTTACTTCTGGTTGGTGGAAGTGATGCATTTGCACGATTATATGATAGAAGGATGCTGCCACCCTTGTCTTCCGGCCAGAAGAAGATGTCGCCACCTCCTTGTGTTAGCTACTTCTGTCCAATGCATCTATCTGATCGGGTTCGATCGGGTTTGCATTTGACTCATGTTACTTTTAGTCCGAATGGAGAAGAGATCCTGCTTAGCTATAGTGGAGAACATGTATACTTGATGAATGTAAATCATGCTGGACTAGGTACAATGCAGTATACATCAGGAGATGTTTCTAAGTTAATGAGCTTCACTCCTGTACTCAACGGATTCGAATTGCAGCATCATGTTTCCAATCTATCTAATAGTTTGCCTTTAAATTGTGCAAAGCTTGATAAATGCAGAAAATTATTACAAATTGCTGAAAAATGCTTGGAGGGTGGGAACTACTTTGGTGGAATTGAAGCATGCAACGAAATTTTGGATGGAAATGGTCGTAATATTAGTGTTATTTTTAAGCACGATTCATTATGCACTCGTGCTGCTTTACTACTCAAGCGGAAGTGGAAGAATGATGTTCATATGGCCATAAGAGATTGTTACAGTGCTAGGAAAATAGATCATTCCTCTTTCAGAGCACATTACTACATGTGCGAAGCTCTATCACAGTTGGGTAGACATAAGGAAGCCCTAGATTTTGCATTTGCTGCTCAGTGTTTATCCCCGTCTAATTCTGAAGTCGCAGAGAAGGTGGAAAGTATAAAGAGGGACCTCGCAGCAGCTGAATTGGAAAAATCAAATAAAGGCAATGATGGAGCTCTAAAATCAGCACCATCAGGTGGTGTATTATCATTAAGTGACTTTCTTTATCGCTCAGATGCGAATAGTGATGTTTCACAAGATGGGCTGAGATCAGAAAGAGAAGATTCTGATTATGATGAGGAGGTGGAGCTCGACTTTGAAACCTTATCTGGTGATGAATCCCATGATGTTGATTCCAACGTTCTACATGGAAGTTTAAATCTTAGAATACATAGACGTGTTGATCCAGCAAGAGAGAGGGTTGGTCCAAACGGCTCCTGTGGGTCTCCATCATCCCAAAATGATGCAACACTTTATCAGCCTGAACCTGTGATTGATATGAAACAAAGATATGTTGGTCATTGTAATATCGGAACTGATATTAAACAAGCCAGTTTTCTCGGGCAAAAAGGTGAATATGTTGCCAGTGGTAGTGATGATGGTAGATGGTTTATTTGGGAAAAGAGAACTGGTAGGCTGATTAAAATACTTGTTGGAGATGGAGCTGTTGTGAATTGCGTGCAAAGTCATCCATTTGATTGTGCAATTGCTACGAGTGGGATCGACAATACCATAAAGGTAAGTATGTATGAGTTTGTTCAAATGACGATAGATCTATTTCCCTTTGTTATTGATGTCCTCTGTCACAGCTATGGACTCCAACTGCTCCAGTTCCATCAGTCGTAG 2163 42.39 MEDFAFHDGNVCALLESRHINFRQDPTYGLQMHSSFIQRLSQEKELEGHQGCVNAVAWNSRGSLLISGSDDTRINIWSYSGRKLLHSVDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLKGRGQDDHPIPSSALYRCHTRRVKKLAVEIGNPNVVWSASEDGTLRQHDFREGMSCPPDGASHQECHNVLLDLRCGAKRSLADPPRQTLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSGQKKMSPPPCVSYFCPMHLSDRVRSGLHLTHVTFSPNGEEILLSYSGEHVYLMNVNHAGLGTMQYTSGDVSKLMSFTPVLNGFELQHHVSNLSNSLPLNCAKLDKCRKLLQIAEKCLEGGNYFGGIEACNEILDGNGRNISVIFKHDSLCTRAALLLKRKWKNDVHMAIRDCYSARKIDHSSFRAHYYMCEALSQLGRHKEALDFAFAAQCLSPSNSEVAEKVESIKRDLAAAELEKSNKGNDGALKSAPSGGVLSLSDFLYRSDANSDVSQDGLRSEREDSDYDEEVELDFETLSGDESHDVDSNVLHGSLNLRIHRRVDPARERVGPNGSCGSPSSQNDATLYQPEPVIDMKQRYVGHCNIGTDIKQASFLGQKGEYVASGSDDGRWFIWEKRTGRLIKILVGDGAVVNCVQSHPFDCAIATSGIDNTIKVSMYEFVQMTIDLFPFVIDVLCHSYGLQLLQFHQS 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1955264 1974764 + MELO3C003537.2.1 Cme04g00248 324509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00248 720 MobiDBLite consensus disorder prediction 573 595 - -
Cme04g00248 720 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 27 686 - -
Cme04g00248 720 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Cme04g00248 720 MobiDBLite consensus disorder prediction 520 540 - -
Cme04g00248 720 Coils Coil 469 489 - -
Cme04g00248 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Cme04g00248 720 SUPERFAMILY TPR-like 358 475 IPR011990 GO:0005515
Cme04g00248 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Cme04g00248 720 SMART WD40_4 39 78 IPR001680 GO:0005515
Cme04g00248 720 SMART WD40_4 603 646 IPR001680 GO:0005515
Cme04g00248 720 SMART WD40_4 136 176 IPR001680 GO:0005515
Cme04g00248 720 SMART WD40_4 649 688 IPR001680 GO:0005515
Cme04g00248 720 SMART WD40_4 81 123 IPR001680 GO:0005515
Cme04g00248 720 SMART WD40_4 204 244 IPR001680 GO:0005515
Cme04g00248 720 Gene3D - 605 694 IPR015943 GO:0005515
Cme04g00248 720 Gene3D - 32 344 IPR015943 GO:0005515
Cme04g00248 720 Gene3D Tetratricopeptide repeat domain 352 501 IPR011990 GO:0005515
Cme04g00248 720 SUPERFAMILY WD40 repeat-like 38 686 IPR036322 GO:0005515
Cme04g00248 720 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 27 686 IPR045151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00248 K11807 WDTC1, DCAF9; WD and tetratricopeptide repeats protein 1 - csv:101206836 1344.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00248 Cme-Chr4:1955264 Cme11g01757 Cme-Chr11:25744227 1.24E-13 dispersed
Cme04g00248 Cme-Chr4:1955264 Cme01g01359 Cme-Chr1:16968246 4.85E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g482 . . . . Bpe02g00134 . . Bma01g02591 . . . Cma09g00587 . . . Cpe06g00448 . . . . . . . . . . . . . . . Cone4ag1309 . . . . Csa03g04480 Chy04g00221 . . . Bda11g00790 . . . . . . Cmo01g01684 Cmo09g00572 . . . Car09g00516 . . Bhi09g02483 . . . Hepe01g2160 Mch11g0699 . . . . . . . . . . . Cme04g00248
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005324 1 4 1 1 1 0 3 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 4 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00248 Cme_Chr04 FPKM 2.396177 3.643162 0.0 0.303181 0.15767 0.0 0.0 0.306594 0.310573 0.19066