Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00250 ATGAGAGTGGATCAAGCTGAAGAAATGTCCGAAGACGAAGATCGATCTTTAACTTCGGATCTAGTTGGTGGTGGTGGTGGAGGTGGTGATGCCATAGCTGAATCTGCTAGTAAAACTCGCAATTGCACAGGGTGTTCTAGTGATGTTACTGCTTCTGGTTCAAATACACTTCATAATGTTCTTGAGAACGTGCTTCACTTTCTAACTTCACGACGTGACCGGAACGCGGCTTCACTTGTTTGCAAGTCATGGTATCGAGTTGAAGCTCTTACTCGATCCGACCTTTTCATTGGGAATTGTTATGCGGTATCCCCTCGTCGAGTTACGTCGCGGTTTAATCTAGTTCGGTCAGTGAGTATTAAAGGGAAGCCTCGGTTTGCTGATTTCAACCTGATGCCGATCAATTGGGGGGCTCACTTTACTCCATGGGTGGCGGCTATGGCTAAGTCATACCCTTGGCTTGAGAGAGTATATTTGAAGCGTATGTCTGTGACTGATGACGATCTGGCTCTGCTTGCTGACTCTTTTCCTGGCTTTAAGGAGCTTGTGTTGTTTTGCTGTGAAGGATTTGGCACCAGTGGTATTGCTGTTGTTGCCGCCAGATGCAGGCACCTTCGAGTACTTGATCTGATTGAATCTGACGTAGCGGATGATGAAGTGGATTGGATATCTTGTTTCCCTGAGAAGGAAACTTGTCTTGAATCTCTGATCTTTGATTGTGTAGAGTGGCCTATTAATTTTGAGGCACTGCAGAGGTTGGTGAGTAGATCCCCATCGTTGAAGAAGCTTGGGGTGAATCGTCATGTTTCCATTACTCAGCTGTACCATTTGATGATTCGGGCTCCACATTTAACGCATCTGGGAACTGGTTCATTTAGTACTTCAGAGGCTGTGGTTCATGGGGACTCAGAGCCTGATTTTACCTCTGCTTTTGCTGCTTGCAAATCCTTAGTTTGTCTTTCTGGATTCAAGGACATTTTGCCTGATTATCTACCTTGTATCTATCCAGTTTGTGCTAATCTCACCACTCTGAACTTGAGCTTTGCAAATATAACCCCTGAACAACTCAAACCAGTCATAAGTCACTGCCACAAGCTCCAAACTTTCTGGGCTCTTGATTCGATATGTGACGAAGGACTTCAGGCTGTTGCTTCAACTTGCAAGGAACTGCGAGAACTTAGGGTTTTCCCTGTTGATCCCCGAGAAGATGTCGAAGGCCCCATTTCTGAAGTGGGCTTCCAGGCAATATCTGAAGGTTGCAGGAAATTGCAATATATTCTATACTTTTGCCAGAAAATGACCAATGCAGCCGTAGTAGCTATGTCACAGAACTGCCAAGATCTTGTGGTGTTTAGACTGTGTATTATGGGACGACACCAGCCAGACCATAAAACCGGAGATCCAATGGATGAAGGATTTGGTGCCATTGTTATTAACTGTAAGAAGCTAACTAGGCTTGCAATATCTGGATTGTTGACGGATCGTGCTTTCAGCTATATTGGGAAGTATGGGAAACTGGTACGCACCCTGTCAGTTGCTTTTGCTGGAAACAGTGATTTGGGGTTGAAGTACGTGCTTGAGGGCTGTCATAGATTGCAAAAACTTGAGATAAGAGATAGCCCATTTGGTGATGGAGCCTTGCGGTCTGGTTTACATCATTACTACAATATGAGATTTCTCTGGATGTCAGCTTGTAAATTGACTCGCCAAGGCTGCCAAGAGGTTGCTAGAGCGATGCCTCACTTAGTGGTTGAGGTGATGAAGAGTGACGAGGAAATTGAAAACGATAGTCAGGTGGAGGGTATGGAGGACCATGTTCAGGTGCTATATATGTATAGATCTCTTGAGGGACCAAGGAATGATACTCCAAAGTCTGTTGACATCCTATAG 1890 44.97 MRVDQAEEMSEDEDRSLTSDLVGGGGGGGDAIAESASKTRNCTGCSSDVTASGSNTLHNVLENVLHFLTSRRDRNAASLVCKSWYRVEALTRSDLFIGNCYAVSPRRVTSRFNLVRSVSIKGKPRFADFNLMPINWGAHFTPWVAAMAKSYPWLERVYLKRMSVTDDDLALLADSFPGFKELVLFCCEGFGTSGIAVVAARCRHLRVLDLIESDVADDEVDWISCFPEKETCLESLIFDCVEWPINFEALQRLVSRSPSLKKLGVNRHVSITQLYHLMIRAPHLTHLGTGSFSTSEAVVHGDSEPDFTSAFAACKSLVCLSGFKDILPDYLPCIYPVCANLTTLNLSFANITPEQLKPVISHCHKLQTFWALDSICDEGLQAVASTCKELRELRVFPVDPREDVEGPISEVGFQAISEGCRKLQYILYFCQKMTNAAVVAMSQNCQDLVVFRLCIMGRHQPDHKTGDPMDEGFGAIVINCKKLTRLAISGLLTDRAFSYIGKYGKLVRTLSVAFAGNSDLGLKYVLEGCHRLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSACKLTRQGCQEVARAMPHLVVEVMKSDEEIENDSQVEGMEDHVQVLYMYRSLEGPRNDTPKSVDIL 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1991727 1995058 + MELO3C003539.2.1 Cme04g00250 324511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00250 629 PANTHER F-BOX PROTEIN FBX14 48 628 - -
Cme04g00250 629 Gene3D - 46 92 - -
Cme04g00250 629 SUPERFAMILY RNI-like 80 595 - -
Cme04g00250 629 Pfam F-box 55 93 IPR041567 -
Cme04g00250 629 MobiDBLite consensus disorder prediction 1 33 - -
Cme04g00250 629 SUPERFAMILY F-box domain 59 87 IPR036047 GO:0005515
Cme04g00250 629 Pfam Transport inhibitor response 1 protein domain 115 159 IPR041101 -
Cme04g00250 629 Gene3D Ribonuclease Inhibitor 94 629 IPR032675 -
Cme04g00250 629 SMART LRR_CC_2 420 444 IPR006553 -
Cme04g00250 629 SMART LRR_CC_2 480 503 IPR006553 -
Cme04g00250 629 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 48 628 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00250 - - - csv:101206433 1219.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00250 Cme-Chr4:1991727 Cme08g00340 Cme-Chr8:2150819 0 dispersed
Cme04g00249 Cme-Chr4:1977629 Cme04g00250 Cme-Chr4:1991727 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g477 . Blo12g00720 . Bda03g00467 Bpe02g00131 Bpe04g00428 Bma04g00441 Bma01g02595 . . Cma01g01635 Cma09g00584 . . . Cpe06g00446 . . . . . . . . . . . . . . . Cone4ag1311 Cone7ag1254 . . Lsi04g02267 Csa03g04477 Chy04g00224 . Blo17g00104 . Bda11g00786 Bda13g01371 . Bpe14g00475 . Bma02g00121 Sed05g1571 Cmo01g01680 Cmo09g00571 . . . Car09g00514 . . Bhi09g02480 Tan01g3834 Cmetu04g2278 . Hepe01g2158 Mch11g0695 . Cla11g01410 Cam11g1467 Cec11g1495 Cco11g1491 Clacu11g1628 Cmu11g1445 Cre11g1864 . . . Cme04g00250
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001591 5 2 2 4 3 0 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 1 2 2 2 2 2 5 2 1 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00250 Cme_Chr04 FPKM 18.25955 19.196617 18.21487 20.230988 17.666975 19.244246 19.587439 30.865555 28.842106 29.379745