Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00257 ATGGCTTCGGTTCGTCTTCCTTGTTCTTCATCTTCCTCAATCCTTCGCTCTAAACAACACCACCATATTTTTCTCGCACCTCTCTCATGTTCGCAAAATCCATCTTATCCCATCAATGGAGACTTCAATCTCTCTGTCTCCCGCTCTTCTCCATCTCTTCTTTCAACTTCCATCTGCCACAATCCTTTGATTTCAATTATGGCTAAGAGAACCAGCAAGTTTGTCTTCCAGTTCGCCTCAACATCCCAAGACGAAGCAGTTTCGAGCTCGCCTTCTGATATTGAAGAATTTTCTCGAACTAGACTGCTTGCTCAGAATGTGCCTTGGGATTCTACTCCGGAGGATATTCGTTCTCTGTTTGAGAAATATGGTACGGTCCTGGATGTGGAGCTTTCTATGTATAACAAGATTAGAAACAGAGGCTTGGCGTTTGTCACTATGGGATCACCGGAGGAAGCCCTTGCTGCGCTTAACAATCTCGAATCGTATGAATTTGAGGGTCGTACTCTGAGGCTCAATTATGCTAAGCTTAAAAAGGAGAAACCCTCCCCTCCTGTGAAACCAAAACCCGTTACGTTTAATTTGTTTGTGGCAAATTTGCCATTTGAAGCAAGAGCAAAGGACCTCAGAGAGTTCTTCGATTCAGGGAGTGGTAATGTAGTGTCTGCACAAATTATTTTTCATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTTGCCTTCAAAGCCAAGAAGGATGCTGAAGCAGCTATTTCTGAGTTCCAAGGGAAGACCTTTATGGGGAGATCACTTCGTGTTGCACGTAGTAAGCAGTTTGTGAAACTTCCTTCAGAAGAGAAATCCCAATCTGAAGATGCATCTACTGATGGTGTGGAGCTAGCCAATGCCGCTGCTGAAGTTTAA 906 43.93 MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICHNPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIEEFSRTRLLAQNVPWDSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPRRSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTDGVELANAAAEV 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2044240 2046381 + MELO3C003546.2.1 Cme04g00257 324518

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00257 301 MobiDBLite consensus disorder prediction 276 301 - -
Cme04g00257 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Cme04g00257 301 SUPERFAMILY RNA-binding domain, RBD 182 275 IPR035979 GO:0003676
Cme04g00257 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 266 IPR000504 GO:0003723
Cme04g00257 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 171 IPR000504 GO:0003723
Cme04g00257 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723
Cme04g00257 301 Gene3D - 67 180 IPR012677 -
Cme04g00257 301 SUPERFAMILY RNA-binding domain, RBD 87 183 IPR035979 GO:0003676
Cme04g00257 301 SMART rrm1_1 101 173 IPR000504 GO:0003723
Cme04g00257 301 SMART rrm1_1 194 268 IPR000504 GO:0003723
Cme04g00257 301 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 1 291 - -
Cme04g00257 301 Gene3D - 181 293 IPR012677 -
Cme04g00257 301 PANTHER OS08G0483200 PROTEIN 1 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00257 - - - csv:101208444 530.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00257 Cme-Chr4:2044240 Cme06g02461 Cme-Chr6:31618092 1.63E-34 dispersed
Cme04g00257 Cme-Chr4:2044240 Cme06g00447 Cme-Chr6:2850612 3.72E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g454 . Blo12g00716 . . Bpe02g00125 . . Bma01g02601 . . . . . . . Cpe06g00441 . . . . . . . . . . . . . . . . Cone7ag1262 . . Lsi04g02259 Csa03g04470 Chy04g00231 . . . Bda11g00780 . . . . . Sed13g2155 . . . . . Car09g00508 . Cpe02g00355 Bhi09g02471 Tan01g3820 Cmetu04g0043 . Hepe01g2151 Mch11g0689 . Cla11g01404 Cam11g1461 Cec11g1489 Cco11g1485 Clacu11g1622 Cmu11g1439 Cre11g1858 . . . Cme04g00257
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009555 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00257 Cme_Chr04 FPKM 5.163451 6.038311 5.355907 3.818474 8.760791 8.088451 8.432936 4.57863 4.748444 5.308583