Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00266 ATGAAGAGATTTAGCCACTCAGATTCCTTAGATTCCTTCATCTCCTTCTTCTCCCCCAAAGATCAGCAACCGAATTCCAAAGCCATAGGTGGTTACAGCAAGGAGTTTCAAGCAATGTTAGACAGTTTAGAGGAAGAAGACAACAGCGAAGACGGCGGGAGCAGTGGCGGTTCGGCACCGGAGAGGAAACGTCGGCTGAAACTGGATCAAGTGAAGGGTTTAGAGAGACATTTTGAAGTGGAAAACAAACTCGAACCCGACAGAAAAATGAAGATCGCAGCTGAATTAGAACTTGAACCAAGACAAGTTACGATTTGGTTCCAAAATCGAAGAGCTCGATGGAAAACCAAGCAATTAGAGAAAGATTATGGAGTTCTTAAACTAAATTATGATGCTCTTAAACTTGATTATGATGTTCTTGAAAAAGAAAATGCTTCTCTTGCTTCAAAGGTGAAAGAGTTGAGGGAGAAAGTAAACAGAGCGATGAAAAAAGGGTCAATGGAGAGAGATGATTCAAACAGAGATGGGAATAATTCGTATATTTCAATGTTGAAGAATAATAATAATCAAATCCAATTTACAAAGGCTATGAATGAGGATCAAAGTTTGGTTAATTTCTGTTCTGTTGATCAAGCTCCTTCTCTCCATTATTGGTAA 657 39.12 MKRFSHSDSLDSFISFFSPKDQQPNSKAIGGYSKEFQAMLDSLEEEDNSEDGGSSGGSAPERKRRLKLDQVKGLERHFEVENKLEPDRKMKIAAELELEPRQVTIWFQNRRARWKTKQLEKDYGVLKLNYDALKLDYDVLEKENASLASKVKELREKVNRAMKKGSMERDDSNRDGNNSYISMLKNNNNQIQFTKAMNEDQSLVNFCSVDQAPSLHYW 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2119143 2120525 + MELO3C003554.2.1 Cme04g00266 324527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00266 218 MobiDBLite consensus disorder prediction 40 66 - -
Cme04g00266 218 Coils Coil 130 164 - -
Cme04g00266 218 Gene3D - 28 121 - -
Cme04g00266 218 SUPERFAMILY Homeodomain-like 49 119 IPR009057 -
Cme04g00266 218 CDD homeodomain 62 118 IPR001356 GO:0003677
Cme04g00266 218 Pfam Homeodomain 63 115 IPR001356 GO:0003677
Cme04g00266 218 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Cme04g00266 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 207 IPR045224 GO:0003700
Cme04g00266 218 SMART HOX_1 60 121 IPR001356 GO:0003677
Cme04g00266 218 Pfam Homeobox associated leucine zipper 117 158 IPR003106 GO:0006355|GO:0043565
Cme04g00266 218 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Cme04g00266 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6 5 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00266 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101209840 373.629
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00266 Cme-Chr4:2119143 Cme04g01900 Cme-Chr4:26702265 1.47E-37 dispersed
Cme04g00266 Cme-Chr4:2119143 Cme08g00748 Cme-Chr8:4996358 8.48E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g449 . . . . . . . . . . Cma01g01625 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g02252 Csa03g04463 Chy04g00238 . . . . . . . . . . Cmo01g01669 . . . . . . Cpe02g00358 Bhi09g02462 Tan01g3812 . . Hepe01g2145 . . Cla11g01398 Cam11g1455 Cec11g1483 Cco11g1480 Clacu11g1614 Cmu11g1433 Cre11g1853 . . . Cme04g00266
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014196 0 2 0 0 0 0 1 0 0 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 0 1 3 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41142 PF00046 Homeodomain 3.50E-15 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00266 Cme_Chr04 FPKM 15.341326 14.088128 15.418201 16.729368 11.457365 11.495621 12.118265 22.153013 21.108412 26.867039