Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00275 ATGCAATCCAAAGACTCTAAATCCCCAGAATTACCTGTCCCTTCGCCTAATTTCCACGCTCCGAACAATTTCCCGCCACCGACTCATCGTCCCACCCCGTCGCCCAATATTCCGGTCAACAACCGACCTAGTCAATCCATAATCCTCTCTCCGGTCCCTCAGCCTCAAAGAGTCTCTGTCGTCTCTCCCCCTTACCATTTCCAAGCTCCTTCTAAAAGAATCCATTCTCCCGATGATATACGCCAATTCCACGATTCCGAATCCGGAAGAAATTTTCTTGGTTTCATAGTTGCTCTTTCCGAATCAACTCGAGGTCGGAAAATTTCTGATCCTTGCTACCAATCTGACACCGTTAATTCCATTGTCTCTATTCTTGATACTCTGATTCAATGGATCGACGATATTCCACCTGCGCGTATGGCGTCTCGATATGGAAACCTTTCTTATCGGATATGGCATGCGCAGATGGTGGAAAACAGCGATTCTCTTATGCTTCGATTTCTCCCCGAGGATCTTCATTCAGCCACCGTGGAAATTGTGCCCTATTTCACTGATAGCTTCGGGAATTCGAGCCGAATCGACTATGGTACTGGGCACGAGACAAATTTCGCAGCCTGGTTGTATTGCTTGGCTAAATTGGGGACAATCAAAGAGGAGGATTACCCTGCTGTTGTAGTTAGGGTTTTCGTGAAGTACCTTGATTTAATGAGGAAATTGCAATTGGTTTATTGTTTAGAGCCTGCGGGTTCCCATGGTGTTTGGGGCCTTGATGATTACCATTTCTTGTCGTACATTTTTGGATCATCACAGTTGATAGATCATAAGTATCTGAAACCTAAATCCATTCATAGTCAGGATATACTAGACAATTTCTCCAACGAGTATCTTTATTTCTCGTGTATTTCTTTTATAAAGAAGGTGAAGAAGGGTCCATTTTCAGAGCATTCGCCATTGCTTGATGATATTAGTGGGGTGCCTAATTGGAACAAGGTCAATAGTGGGTTGCTGAAGATGTATAAGGTGGAAGTATTAGAGAAAGTACCCATTATGCAGCATTTTCTCTTTGGATGGCTCATCAAATGCGGACTGGAGATGGCAGAGGAAAATGATTTCAGGCACTGGGACGAGCTAATACCGGACGCTTTGGGGCTAATCTTCAGTAAACTTTCACTCCAAGAGAAACTGACCGTTATTCCTAGGGTCTGCAAATCATGGGCCAAAGCAGTTCTTGGACCTTATTGCTGGCAAGAGATTGACATTGAAGAATGGAGTAGTCGAAGGCAACTTGACAACGTCGATCGAATGCTTCAAATGCTGATAAATCGAAGTGGTGGGTCGCTTCGCAAGCTCTGCGTTACTGGTCTTCATAACAGCAGCATTTTCTTCTCCATCGCTGATCATGCTGGTTCTCTTCAAACATTGCGACTACCAAGGAGCAATATAAGCGATGCTGTAGCAGAACAAATTGCCGGAAGGCTTTGTGCAGTTACTTTTTTGGATCTAAGCTATTGTGATAAAATCAGTGCCTGTGGTTTAGAGTCCATAGGAAAGAATTGCAAAGCTTTAGTTGGAATGTGTCGTAACTTGCATCCGCTCCATACAGCAGGTATATCCTCCCCGGACGATGAAGCTTATACTATCGCATCCACAATGCCAAAACTCAAGCACCTTGAAATGGCTTATCACCCTCTAAGCACTAAAAGCTTACTCACGATACTTTCAAGCTGCCCCGACCTTGAGTTCCTCGATTTGAGAGGCTGTGGGGATGTAAGGCTGGAAGACAAATTTCTTGCAGAGAAGTTCCCAAAACTAAGGGTGTTGGGGCCTCCCGTTAGGGACGTCTACGAGAGAAACGAATGGGACGAAGGCTCAGACTACTCATACATATCAGAAGACTTGGCGTGGGACTTCTCTGCAGATTACTTCGACGATGCTGGTAGTTTCGACGACCAATGGGATGATGAAGGCAGACTGGAAGGACTCGAGTTGAGATTTTACGAAGGAATAGATGAAGATAATGAAGCTTTTGGTTGGCCTCCCTCCCCTTAA 2049 44.85 MQSKDSKSPELPVPSPNFHAPNNFPPPTHRPTPSPNIPVNNRPSQSIILSPVPQPQRVSVVSPPYHFQAPSKRIHSPDDIRQFHDSESGRNFLGFIVALSESTRGRKISDPCYQSDTVNSIVSILDTLIQWIDDIPPARMASRYGNLSYRIWHAQMVENSDSLMLRFLPEDLHSATVEIVPYFTDSFGNSSRIDYGTGHETNFAAWLYCLAKLGTIKEEDYPAVVVRVFVKYLDLMRKLQLVYCLEPAGSHGVWGLDDYHFLSYIFGSSQLIDHKYLKPKSIHSQDILDNFSNEYLYFSCISFIKKVKKGPFSEHSPLLDDISGVPNWNKVNSGLLKMYKVEVLEKVPIMQHFLFGWLIKCGLEMAEENDFRHWDELIPDALGLIFSKLSLQEKLTVIPRVCKSWAKAVLGPYCWQEIDIEEWSSRRQLDNVDRMLQMLINRSGGSLRKLCVTGLHNSSIFFSIADHAGSLQTLRLPRSNISDAVAEQIAGRLCAVTFLDLSYCDKISACGLESIGKNCKALVGMCRNLHPLHTAGISSPDDEAYTIASTMPKLKHLEMAYHPLSTKSLLTILSSCPDLEFLDLRGCGDVRLEDKFLAEKFPKLRVLGPPVRDVYERNEWDEGSDYSYISEDLAWDFSADYFDDAGSFDDQWDDEGRLEGLELRFYEGIDEDNEAFGWPPSP 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2173027 2179621 - MELO3C003564.2.1 Cme04g00275 324536

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00275 682 PANTHER F-BOX PROTEIN FBW2 370 682 - -
Cme04g00275 682 SUPERFAMILY RNI-like 400 607 - -
Cme04g00275 682 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 70 360 IPR004327 GO:0019211
Cme04g00275 682 CDD PTPA 92 356 IPR004327 GO:0019211
Cme04g00275 682 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 370 682 - -
Cme04g00275 682 SUPERFAMILY PTPA-like 62 361 IPR037218 GO:0019211
Cme04g00275 682 Gene3D - 256 369 IPR043170 -
Cme04g00275 682 MobiDBLite consensus disorder prediction 14 38 - -
Cme04g00275 682 MobiDBLite consensus disorder prediction 1 44 - -
Cme04g00275 682 Gene3D Ribonuclease Inhibitor 370 608 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00275 K17605 PPP2R4, PTPA; serine/threonine-protein phosphatase 2A activator - csv:101211071 636.721
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00275 Cme-Chr4:2173027 Cme08g00100 Cme-Chr8:757178 2.44E-20 dispersed
Cme08g00103 Cme-Chr8:763426 Cme04g00275 Cme-Chr4:2173027 8.88E-06 dispersed
Cme05g01484 Cme-Chr5:24283252 Cme04g00275 Cme-Chr4:2173027 8.83E-23 transposed
Cme07g01150 Cme-Chr7:15118568 Cme04g00275 Cme-Chr4:2173027 3.75E-91 transposed
Cme03g01856 Cme-Chr3:26830598 Cme04g00275 Cme-Chr4:2173027 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g435 . . . . Bpe02g00115 . . . . . Cma01g01614 Cma09g00566 . . . Cpe06g00430 . . . . . . . . . . . . . . . . . Cone17ag1208 Cone20ag0517 Lsi04g02245 Csa03g04456 Chy04g00246 . . . Bda11g00772 . . Bpe14g00460 . Bma02g00135 . Cmo01g01660 . . . . . . Cpe02g00366 Bhi09g02449 . . . . . . Cla11g01391 Cam11g1447 Cec11g1475 Cco11g1472 Clacu11g1606 Cmu11g1425 Cre11g1845 . . . Cme04g00275
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002091 1 4 1 1 2 1 3 1 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 1 2 2 6 3 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00275 Cme_Chr04 FPKM 2.264321 2.314883 11.262201 10.698324 0.321244 0.551211 0.471177 0.256551 0.319941 0.172555