Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00276 ATGTCCTCCATTACTCTCCTTCTTCTCCTTTTACTCTCTTCCTCTCTTCACTCCATCTCCGCCACCTTCACCGTCGCCGTTGCCGGTAACCTCGCCTTCGCCGACCAACCTCTTGATCTCGACTCCTTCCCCTTTGAATACCACGGCGGCCCTCTTCTCTCCGGTAACGTAACCATCAATCTCATTTGGTATGGCAATTTCAATCCTTCTCAGAAATCCATTGTTCTCGATTTCATCACTTCCATTTCTTCTTCTTCTTCTTCTTCCAAATCAATCATTTCCCCTCATCCCTCTGTTTCCACTTGGTGGAATGCGATTAACAGATTTTATAAGCTTGCTAAGAAATCAAAATCCTCTCGTCTTACTCTCTCGTTGGGATCACAGATTCTTGACCCCAAATATTCCCTTGGAAAATCTCTAACCGATCGTCATATTCTTTCTCTGGCTTCCAGAGGCAGGCAGAAATATGCTATCAATGTGGTTTTAACGGCGGCGGATGTTACCGTAAACGGATTCTGTTTTAACAAATGTGGGTCTCATGGGGTTTTAGCCGGAGCTCCGATTAAGGGGAACAGGTACAAATTTGCGTATATTTGGGTTGGTAATTCGGCAACACAATGTCCAGGGCAGTGTGCTTGGCCGTTTCACCGGCCGGTGTATGGTCCTCAGAATCCACCGTTACTGCCACCGAATAAAGATGTGGGAATGGACGGCGTTATAATAAACTTGGCGACTCTTCTTGCCGGTACTGCGACGAACCCGTTCGGGAATGGGTTTTATCAAGGCTCCAAGGAAGCACCGCTCGAGGCGGCGACGGCATGCACCGGAATATTTGGGAAAGGAGCTTTTCCAGGGTACCCTGGGGAGGTTCTGGTGGACCGAACCACCGGAGCGAGTTACAATGCGAACGGCGGCAATGGGCGGAAATATCTGCTTCCGGCGTTGTTTAATCCGATCACTTCCACTTGTTCGCCTCTGGTTTGA 984 48.78 MSSITLLLLLLLSSSLHSISATFTVAVAGNLAFADQPLDLDSFPFEYHGGPLLSGNVTINLIWYGNFNPSQKSIVLDFITSISSSSSSSKSIISPHPSVSTWWNAINRFYKLAKKSKSSRLTLSLGSQILDPKYSLGKSLTDRHILSLASRGRQKYAINVVLTAADVTVNGFCFNKCGSHGVLAGAPIKGNRYKFAYIWVGNSATQCPGQCAWPFHRPVYGPQNPPLLPPNKDVGMDGVIINLATLLAGTATNPFGNGFYQGSKEAPLEAATACTGIFGKGAFPGYPGEVLVDRTTGASYNANGGNGRKYLLPALFNPITSTCSPLV 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2180801 2182033 - MELO3C003565.2.1 Cme04g00276 324537

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00276 327 Pfam Phosphate-induced protein 1 conserved region 46 324 IPR006766 -
Cme04g00276 327 PANTHER PROTEIN EXORDIUM-LIKE 5 10 327 IPR006766 -
Cme04g00276 327 PANTHER PROTEIN EXORDIUM-RELATED 10 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00276 - - - csv:101211728 607.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00276 Cme-Chr4:2180801 Cme07g01271 Cme-Chr7:17615515 7.95E-112 dispersed
Cme04g00276 Cme-Chr4:2180801 Cme04g00277 Cme-Chr4:2185614 4.31E-146 tandem
Cme03g01857 Cme-Chr3:26842331 Cme04g00276 Cme-Chr4:2180801 9.58E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g433 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1210 . . . Chy04g00247 . Blo17g00115 . . . . . Bma01g01400 . . . . . . . . . . . . . . . . . Cla11g01390 Cam11g1446 Cec11g1473 Cco11g1470 Clacu11g1604 Cmu11g1423 . . . . Cme04g00276
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00276 Cme_Chr04 FPKM 45.406975 48.161392 35.821785 33.505165 34.088833 31.235903 36.29726 43.406029 39.481461 41.557407