Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00277 ATGTCTTCTTCCATTTCCCTTCTTCTCATTCTCTTCTTCTCACTCTCTTTTTCCCTTCACTTCTTCTTCTCCTCCGCCGCCAGAAACCCATCTTTCCTCTTCCATTCCCACGGCGGACCTCTTCTCTCCGGCAACATCTCCCTCACTCTCATTTGGTATGGCAATTTCAACCCTTCTCAGAAAGCCATCGTCATCGATTTCCTCTCTTCCCTTTCTTCTTCCAAATCTATTCCCCCAAACCCCTCTGTTTCCACTTGGTGGAACTCTGTTCTCAAATATCATACCATTTCCAATTCCAAACCTCTTTCTCTTTCTTTAGCCTCTCAAATCCTCGACCCCAATTACTCCCTTGGCAAATCCCTTACCAATTCCCACATTCTCTCTCTCGCTTCCAAAGGCGGTCACAGAAATTCAATCAATCTCGTCTTAACTGCCGCCGATGTTACTGTCGACCGATTCTGTTTCAACAGATGCGGCTCCCATGGATACTCTCACGGAGCTCCCATTAATGGGAAGTCCTACAAATTCGCTTACATTTGGGTGGGGAATTCCCAAACACAATGTCCGGGTTACTGCGCTTGGCCTTTCCACCAACCATTGTACGGTCCACAGACTCCGCCGTTGGTTGCGCCTAACAATGACGTTGGGATGGACGGCCTTGTCATTAACCTTGCTGCTCTTCTCGCTGGAACTGCCACCAACCCTTTTGGGAATGGGTTCTATCAGGGCCCTAAGGAGGCTCCGGTAGAGGCAGCGTCGGCCTGTACCGGAATCTTTGCGAAGGGTTATTATCCCGGATTTCCTGGGGAGCTTCTTGTGGACTCGGTTACCGGTGGGAGTTACAATGCGAACGGTGGGAATGGGCGGAAATATCTTCTTCCGGCGGTGTTTGATCCCACCACTTCTGCTTGTTCTACTCTCGTTTAA 927 49.51 MSSSISLLLILFFSLSFSLHFFFSSAARNPSFLFHSHGGPLLSGNISLTLIWYGNFNPSQKAIVIDFLSSLSSSKSIPPNPSVSTWWNSVLKYHTISNSKPLSLSLASQILDPNYSLGKSLTNSHILSLASKGGHRNSINLVLTAADVTVDRFCFNRCGSHGYSHGAPINGKSYKFAYIWVGNSQTQCPGYCAWPFHQPLYGPQTPPLVAPNNDVGMDGLVINLAALLAGTATNPFGNGFYQGPKEAPVEAASACTGIFAKGYYPGFPGELLVDSVTGGSYNANGGNGRKYLLPAVFDPTTSACSTLV 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2185614 2186746 + MELO3C003566.2.1 Cme04g00277 324538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00277 308 Pfam Phosphate-induced protein 1 conserved region 36 307 IPR006766 -
Cme04g00277 308 PANTHER PROTEIN EXORDIUM-LIKE 5 8 308 IPR006766 -
Cme04g00277 308 PANTHER PROTEIN EXORDIUM-RELATED 8 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00277 - - - csv:101211963 549.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01857 Cme-Chr3:26842331 Cme04g00277 Cme-Chr4:2185614 8.94E-142 dispersed
Cme04g00277 Cme-Chr4:2185614 Cme07g01271 Cme-Chr7:17615515 8.05E-113 dispersed
Cme04g00276 Cme-Chr4:2180801 Cme04g00277 Cme-Chr4:2185614 4.31E-146 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g431 . . . . Bpe02g00114 . . . . . . . . Car12g00151 . . Cpe07g00139 . . . . . . . . . . . . . . . . . . . . Chy04g00248 . Blo17g00116 . Bda11g00771 . . . . Bma02g00138 . . . . . . . . . . . . . . . . Cla11g01389 . Cec11g1472 Cco11g1469 Clacu11g1603 Cmu11g1422 Cre11g1843 . . . Cme04g00277
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000841 2 4 5 3 3 1 3 3 2 3 3 3 2 3 3 2 3 5 3 2 3 3 3 4 4 4 3 1 4 1 88
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00277 Cme_Chr04 FPKM 2.876437 0.315908 0.921109 1.533292 0.703405 1.530887 0.504645 1.035524 0.907909 1.282508