Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00281 ATGTCCAGGCCTTTACATCGAGGTGCGTCCGGTGTTAAGGTACATGGTCATGGAGATGATAAATGGGACTCTCAAATGAAAGACAAAACTGATAAGGAAGAGGTGGACAGAAAAGGTTCTTTAGATCATGGAGGAAATTTGGCTCCGAGGTTACCGTTTCGCCTACTTCTTCCAGACAACTCCCCTTCTAAACATGGTGGAACTGAGAATGGCTTTGCTTCTGATTCTTTTTTAGTTGGGAACTCAAGAAGTCGGCAACAATTTATATTGCAAATGTTGAGATTGAGTTTAGTGTTGATTATTATCCTTGCTCTTACTGGATCTTTCTGGTGGACACTCTCCATTTCTGGTTCATCCCAAGTTCAAATCTTCCATGGTTATCGGCGACTACAAGAGCAGCTTGTTTCAGACCTTTGGGATATAGGGGAGATTTCTCTGGGTCCTTCAAGGTTGAAAGAGCTTGAATTTTGTTCGCCGGAGTTTGAGAATTATGTTCCCTGCTTCAATTCAAGCCTCTCTCAAGAGGATGAGTATGATAGACATTGTGAACCTAACTCGTCGCTAAACTGTTTGATACAACCTCCCTTGAAATACAAGATTCCACTTAGATGGCCTACTGGAAGGGATGTTATCTGGTCGTCAAATGTGAAAATCTCAGCGCAGGAGGTCCTTACCTCAGGAAGCTTGACCAAAAGGATGATGATGCTAGAGGAAGAACAAATATCTTTTCGTTCTGCGTCTCCAATGTTTGATGGCGTCGAAGATTATTCTCACCAAATTGCAGAAATGATTGGGCTGAGAAATGAATCAAATTTCAGAGAAGTTGGGGTAAGAACCATTCTGGATATAGGGTGTGGTTATGGAAGTTTTGGAGCACATCTTTTCTCAAAACATCTCTTAACGATGTGCATAGCAAATTATGAGGCTTCAGGCAGTCAGGTTCAGTTAACTCTTGAAAGGGGTCTTCCTGCAATGCTTGGTTCTTTTACTTCAAAACAATTGCCATTTCCATCTCTTTCCTATGATATGGTTCATTGTGCACGATGTGGCGTTGACTGGGATAGTAAAGATGGTAGATACCTGATTGAGGTTGATAGAGTTTTGAAGCCAGGTGGGTATTTTGTGTGGACATCGCCACAGACAAATACACAGGGCGTTCTTCACAAAAAAGAGAACCTGAAAAGATGGAACTTCATTCAGGATTTTGTGGAATATTTGTGCTGGGAGATGTTGAATCAACAAGATGAAACTGTTGTCTGGAAGAAAACTAGTAAAAGCAATTGTTATAGCTCACGGAAGCCAGATTCGTCTCCTCCAATATGTGGTAAAGGTCATGACATTGAATCTCCATATTATAGACCACTCCAAGACTGCATTGGGGGAAGAAAAAGTCGTCGTTGGGTTCCTATTTACGAAAGACAAACTTGGCCTTCAAGGGCTAACTTGAACAAGAGTGAACTGGCTTTGCATGGATTGGCTTTAGATGATGTCGCAGATGATTCTCTTAACTGGAAAATGGCAGTGAAAAACTATTGGTCTCTTTTGTCGCCACTAATCTTCTCGGATCATCCAAAACGACCAGGTGATGAGGATCCTTTACCCCCATACAACATGCTTCGAAATGTGCTAGATATGAATGCTCATTATGGAGGTTTCAATTCTGCATTATTGGAAGCTGGGAAATCTGTATGGGTCATGAACGTAGTACCAACAGATGGACCTAACCATCTTCCCATGATAATGGATAGAGGTTTCGTTGGGGTATTGCACGATTGGTGCGAGGCCTTTCCAACATATCCTAGATCATATGATTTGGTTCATGCGGCAGGACTTATGTCCCTTGAAGCAAGTAAGAAGCCAAGGTGCTCCATGCTTGATTTATTCAGTGAGATTGATCGGTTACTTCGTCCAGAGGGTTGGGTGATAATCCGCGACACCACCACACTTATCGAGTCAGCTCGAACTGTAACTACACAGCTTAAGTGGGATGCACGAGTTACAGAAATTGAAGATAACAATGATGAGAGAGTGCTGATCTGCCAAAAACCTTTCTTGAAGAGACAAGCAAAGTGA 2073 42.21 MSRPLHRGASGVKVHGHGDDKWDSQMKDKTDKEEVDRKGSLDHGGNLAPRLPFRLLLPDNSPSKHGGTENGFASDSFLVGNSRSRQQFILQMLRLSLVLIIILALTGSFWWTLSISGSSQVQIFHGYRRLQEQLVSDLWDIGEISLGPSRLKELEFCSPEFENYVPCFNSSLSQEDEYDRHCEPNSSLNCLIQPPLKYKIPLRWPTGRDVIWSSNVKISAQEVLTSGSLTKRMMMLEEEQISFRSASPMFDGVEDYSHQIAEMIGLRNESNFREVGVRTILDIGCGYGSFGAHLFSKHLLTMCIANYEASGSQVQLTLERGLPAMLGSFTSKQLPFPSLSYDMVHCARCGVDWDSKDGRYLIEVDRVLKPGGYFVWTSPQTNTQGVLHKKENLKRWNFIQDFVEYLCWEMLNQQDETVVWKKTSKSNCYSSRKPDSSPPICGKGHDIESPYYRPLQDCIGGRKSRRWVPIYERQTWPSRANLNKSELALHGLALDDVADDSLNWKMAVKNYWSLLSPLIFSDHPKRPGDEDPLPPYNMLRNVLDMNAHYGGFNSALLEAGKSVWVMNVVPTDGPNHLPMIMDRGFVGVLHDWCEAFPTYPRSYDLVHAAGLMSLEASKKPRCSMLDLFSEIDRLLRPEGWVIIRDTTTLIESARTVTTQLKWDARVTEIEDNNDERVLICQKPFLKRQAK 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2223392 2229030 + MELO3C003569.2.1 Cme04g00281 324542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00281 690 MobiDBLite consensus disorder prediction 12 43 - -
Cme04g00281 690 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 44 687 IPR004159 GO:0008168
Cme04g00281 690 PANTHER PECTIN METHYLTRANSFERASE QUA2-RELATED 44 687 - -
Cme04g00281 690 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 170 682 IPR004159 GO:0008168
Cme04g00281 690 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 538 651 IPR029063 -
Cme04g00281 690 MobiDBLite consensus disorder prediction 1 47 - -
Cme04g00281 690 CDD AdoMet_MTases 279 375 - -
Cme04g00281 690 Gene3D Vaccinia Virus protein VP39 249 430 IPR029063 -
Cme04g00281 690 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 250 394 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00281 K23870 QUA2, TSD2; putative pectin methyltransferase [EC:2.1.1.-] - csv:101212448 1388.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00281 Cme-Chr4:2223392 Cme10g00364 Cme-Chr10:2342211 0 dispersed
Cme04g00281 Cme-Chr4:2223392 Cme06g00208 Cme-Chr6:1266372 3.99E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g417 . Blo12g00708 Bda01g00888 Bda03g00489 Bpe02g00111 Bpe04g00443 . Bma01g02610 Cmo05g00528 . Cma01g01610 Cma09g00561 Car01g01228 . . Cpe06g00427 . . . . . . . . . . . . . . . Cone4ag1332 Cone7ag1597 Cone17ag1213 Cone20ag0512 Lsi04g02238 Csa03g04449 Chy04g00251 . Blo17g00117 Blo18g00131 Bda11g00768 Bda13g01399 Bpe02g01124 Bpe14g00456 Bma01g01401 Bma02g00139 Sed14g0863 Cmo01g01656 Cmo09g00551 . . Car05g00451 Car09g00492 Cpe11g00441 Cpe02g00370 Bhi09g02441 Tan01g3792 Cmetu02g0320 . Hepe01g2131 . . Cla11g01386 Cam11g1443 Cec11g1469 Cco11g1465 Clacu11g1600 Cmu11g1419 Cre11g1839 Lsi08g00889 . . Cme04g00281
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002427 4 2 2 4 4 0 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 1 1 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00281 Cme_Chr04 FPKM 208.272888 211.243073 203.078995 187.916901 161.184067 223.509598 160.173386 165.804062 189.695877 178.66658