Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00283 ATGGCGAAATTCAATTGCTTCTCTGGCCGGACAGGGAAGAAGAAGAAAACCAAGACTGATTTGGAATCGCAAAAACCCGCTGAATTGAATTACTTGAAGAAAACTTTGCAAGTCAGCATCCATCATTCTGAGGAGCCTTTTCAAGTTGGAGAAGGGAAATCGTCTACTCTAGACGTTGCAATTCTGTACCCATCTGAGAATAATTCGAAGCTGGATGTTAAGGTGACGAACCATGAGAGTCCTGCAGTAGGAGCAGTAGAAACTGAATATGAAGGAGAGGATGAGCGCGACGACAACTCTATCAAGAGGAATCTTTCCGACTTTGATCTCCCTGCGCAAGACAACTGTGGAGGAGAATTTGAGTTTCAATTATTGGGAAACCATTTCGATAAGATCACTACTGAAGGTGAAGGTGGTGAAGGAATAGGAGTAGAAGGAGAAGGGGTTGATGCGTCGATCCAAAATGGGCATCTTAGTGATCCTGGTATTGGTAAGGCAGTATGTTGGGCATCGCCTAAACTTAAACGCTCCTGCTCTAATCTTGAAACTAGGGATGTGCTTAGAGATTTATCTCATCAGTTGCCTCCTCCAAAGTCTCAGTCTTTCGAAAAGCTGCAAGAGTTGGCGAACGAAATGAGGGACTATGTTGATCCAGGCAGTCCAGGGTCTATTATGACCCATCGTAGTGCTGATAAAGTCATGTTGAAGAAGCGTTCTTCAAGCCAGATTCTTCCTTCAAGAAGTAGAAGGTTGTGGTGGAAATTGTTCCTGTGGAGCCATAGAAACCTGCAAAAGCCGTGGACTATCAAGGCTACTCCCACCAACTCTGCTTTCAACCAGCAAGGTGGGTATTGCTCTGACAATCTTGAGCCGAACAGAGCAGCGGGGAAAAGTATGCTTGAATCACCAGAATCATTTACTGAGGAATCCTGGACCAACGGCCCGTGTAACAACAAAAGCGATGATCAGGATCAGGTTCAGGAGAATTTGTGTAATGGAGTCTCTGGTTTGTGGCCACAAAATCAATGGGTTGCGTTTTCAGCAGAATCATCTTCTCTTAGAAGAGTGGATGAGTGGGTGAAGGATCTTCAAATCGAACCATGTCTTTCAATCGACGAGGTTGGAGGTGACAATGATGAAGCTACCGTCTTCCCACCCTCTCCTGAGAGAACTTCAACTCACACGCCCCGACGTGGCGAACCCAATCTGACGGAAGAGATTTTGTATGCCAATAGTGTCATCCAGTCGTTGAATTCTTCGTCAACCGTGGCTCACATCTCTGGTATTGGCTTAAGAGCCATACCCACAATCTCACACCTATCCGGTCTTAGATCTGTCAATTTGTCCGGCAACCTCATACTACACATTAACCCTGGATCACTGCCCAAGGGACTGCACACTCTCAATTTGTCCAGGAACAAGATCAGTGTCATTGAAGGGCTCAAAGAATTAACACGACTTCGGATACTGGATCTGAGTTACAATCGCATATCTCGTATAGGACATGGGTTGTCAAACTGTACGATTATCAAGGAACTTTATCTTGCTGGCAACAAGATTAGTGATGTTGAGGGACTGCATCGAATCTTGAAGCTGACAGTTCTCGACCTAAGCTTTAACAAGATTTCAACCACCAAAGCTCTGGGCCAACTTGTTGCCAACTATAACACTCTTCAAGCTCTCAATCTGTTGGGGAATCCAATTCAAAGTAATGTGAGCGATGACCAGCTACGCAAGGCAGTTACTGGCCTTCTTCCAAACCTTGTTTATCTAAACAAGCAAGCCATCAAAGCACAGAGAGCTCGAGAAGTTGCAACTGATAGCATTGCCAAAGCTGCACTAGGGAACAGTAATTGGAGTTCGCGTAGAAGAACATCAAGGAAAACAAGTCATATACCATCGTCTTCCATTAGTGGACACAGAAGCACTGCAAGCGTTGCACACAAAGGCAGGCACAGATCAAAAGCTCCAACCGTTCGTCATTCTTCTCTGAGGATGTCTTCATCAGCTCTTGCCTCATCAACTCGTTAG 2031 45.25 MAKFNCFSGRTGKKKKTKTDLESQKPAELNYLKKTLQVSIHHSEEPFQVGEGKSSTLDVAILYPSENNSKLDVKVTNHESPAVGAVETEYEGEDERDDNSIKRNLSDFDLPAQDNCGGEFEFQLLGNHFDKITTEGEGGEGIGVEGEGVDASIQNGHLSDPGIGKAVCWASPKLKRSCSNLETRDVLRDLSHQLPPPKSQSFEKLQELANEMRDYVDPGSPGSIMTHRSADKVMLKKRSSSQILPSRSRRLWWKLFLWSHRNLQKPWTIKATPTNSAFNQQGGYCSDNLEPNRAAGKSMLESPESFTEESWTNGPCNNKSDDQDQVQENLCNGVSGLWPQNQWVAFSAESSSLRRVDEWVKDLQIEPCLSIDEVGGDNDEATVFPPSPERTSTHTPRRGEPNLTEEILYANSVIQSLNSSSTVAHISGIGLRAIPTISHLSGLRSVNLSGNLILHINPGSLPKGLHTLNLSRNKISVIEGLKELTRLRILDLSYNRISRIGHGLSNCTIIKELYLAGNKISDVEGLHRILKLTVLDLSFNKISTTKALGQLVANYNTLQALNLLGNPIQSNVSDDQLRKAVTGLLPNLVYLNKQAIKAQRAREVATDSIAKAALGNSNWSSRRRTSRKTSHIPSSSISGHRSTASVAHKGRHRSKAPTVRHSSLRMSSSALASSTR 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2230889 2234190 - MELO3C003571.2.1 Cme04g00283 324544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00283 676 ProSiteProfiles Leucine-rich repeat profile. 486 508 IPR001611 GO:0005515
Cme04g00283 676 MobiDBLite consensus disorder prediction 1 25 - -
Cme04g00283 676 Pfam Leucine rich repeat 464 520 IPR001611 GO:0005515
Cme04g00283 676 MobiDBLite consensus disorder prediction 617 676 - -
Cme04g00283 676 MobiDBLite consensus disorder prediction 645 659 - -
Cme04g00283 676 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 660 - -
Cme04g00283 676 SUPERFAMILY Outer arm dynein light chain 1 433 596 - -
Cme04g00283 676 Gene3D Ribonuclease Inhibitor 506 602 IPR032675 -
Cme04g00283 676 MobiDBLite consensus disorder prediction 660 676 - -
Cme04g00283 676 SMART LRR_typ_2 440 463 IPR003591 -
Cme04g00283 676 SMART LRR_typ_2 484 507 IPR003591 -
Cme04g00283 676 MobiDBLite consensus disorder prediction 303 324 - -
Cme04g00283 676 MobiDBLite consensus disorder prediction 302 324 - -
Cme04g00283 676 MobiDBLite consensus disorder prediction 373 400 - -
Cme04g00283 676 Pfam Leucine Rich repeat 531 543 IPR001611 GO:0005515
Cme04g00283 676 SMART LRR_sd22_2 462 483 - -
Cme04g00283 676 SMART LRR_sd22_2 484 506 - -
Cme04g00283 676 SMART LRR_sd22_2 529 550 - -
Cme04g00283 676 SMART LRR_sd22_2 507 528 - -
Cme04g00283 676 ProSiteProfiles Leucine-rich repeat profile. 464 485 IPR001611 GO:0005515
Cme04g00283 676 Gene3D Ribonuclease Inhibitor 403 505 IPR032675 -
Cme04g00283 676 ProSiteProfiles Leucine-rich repeat profile. 531 552 IPR001611 GO:0005515
Cme04g00283 676 PANTHER NISCHARIN RELATED 3 660 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00283 - - - csv:101212929 1246.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00382 Cme-Chr1:2773071 Cme04g00283 Cme-Chr4:2230889 1.11E-73 dispersed
Cme02g01658 Cme-Chr2:23790954 Cme04g00283 Cme-Chr4:2230889 4.40E-08 dispersed
Cme04g00283 Cme-Chr4:2230889 Cme05g01997 Cme-Chr5:28490768 5.55E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g415 . . . Bda03g00490 Bpe02g00110 Bpe04g00445 . . . . Cma01g01609 Cma09g00558 Car01g01227 . . Cpe06g00424 . . . . . . . . . . . . . . . Cone4ag1333 Cone7ag1596 Cone17ag1215 Cone20ag0510 Lsi04g02236 Csa03g04447 Chy04g00253 . . . Bda11g00767 . . . . . Sed05g1600 Cmo01g01655 Cmo09g00548 . . . Car09g00489 . Cpe02g00371 Bhi09g02438 Tan01g3790 Cmetu12g0935 . Hepe01g2129 Mch11g0667 . Cla11g01383 Cam11g1441 Cec11g1467 Cco11g1463 Clacu11g1598 Cmu11g1417 Cre11g1837 . . . Cme04g00283
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008863 1 1 0 0 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00283 Cme_Chr04 FPKM 0.483143 0.0 0.0 0.0 0.593621 0.471938 0.0 0.102149 0.068716 0.176807