Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00305 ATGGAGTCTCGTTTTTCACTCCTACTTCTCCTACTGATCTCCCTTGGGATTGTTTGTAGTTATGCTGCCGATGATGATATTGATATCTCGCCTGAACAGTATTGGGAATCTGCCTTGCCAAACACTCCTATGCCCAAAGTTATTACACATCTCCTCGGTTTGGACTTTCTAGAAGGGAAAAGCACTTCAGTGAATGTTGGTAAAGGGGGCGTAAACGTCAACACCGGAAAAGGCAAGCCTAAAGGCACCTCCGTTAACGTCGGGAAAGGCGGAGTGAACGTCAACACTCCAAAACCAAAGCAAGGAGGCACTTCCGTTAACGTCGGAAAAGGCGGAGTAAACGTCAACACTCCAAAACCAAAGCAAGGAGGCACTTCCGTTAACGTCGGTAAAGGAGGCGTTAACGTCCACACCGGTCGTAAAGGTAAACCGGTTTATGTTGGAGTTAAACCGGGCTACAGTCCTTTTAATTACGTATACGCAGCCACAGAAACCCAAGTCCATGATGACCCAAATACAGCCCTTTTCTTTCTTGAAAAAGATCTCAACCCTAATTCTAAATTCACCCTTCATTTCCCTAAACAAACAACAACCACCACCACTAAGTTCTTGCCACGTCGGGTTGCCAAATCACTCCCTTTCTCTTCCCAAAAACTGCCCCAAATCCTCACCCACTTCTCCATTCCTCCCGCGAGTCTCGAGGCCGAGTCGATTCGAAACACGATTGACCAATGCGAAGCACCTGGTATTGTCGGTGAAGATAAGTTCTGCGCTACGTCATTAGAATCCATGGTGGATTTTAGTACTTCTAAGTTGGGAAAGAAAGTGACGTTGGTCTCGACAGAAATCGAGAAAGATACAGATTTACAAGCGTTTACTGTTGTAAATTTGACGAAGAAATCATCAGGAGTGACAGACTCTGCGGTTGTGTGTCATAAGTTGAGTTATCCATATGCAGTGTTCTATTGTCATTACACACAACATACGCGTGTTTACAAGGTTAGTTTGTTGGGTGTTGATGGAACTAAAGCTGATGTGGCAGCCGCATGTCACACCGACACGTCGGCTTGGAATCCAAAGCATTTGGCTTTTCAGGTGTTGAAGGTGAAGCCAGGGACAGTTCCGGTTTGCCATTTCCTTCCACAAGACCATGTTGTATGGGTTTCAAAATACTAG 1176 45.58 MESRFSLLLLLLISLGIVCSYAADDDIDISPEQYWESALPNTPMPKVITHLLGLDFLEGKSTSVNVGKGGVNVNTGKGKPKGTSVNVGKGGVNVNTPKPKQGGTSVNVGKGGVNVNTPKPKQGGTSVNVGKGGVNVHTGRKGKPVYVGVKPGYSPFNYVYAATETQVHDDPNTALFFLEKDLNPNSKFTLHFPKQTTTTTTKFLPRRVAKSLPFSSQKLPQILTHFSIPPASLEAESIRNTIDQCEAPGIVGEDKFCATSLESMVDFSTSKLGKKVTLVSTEIEKDTDLQAFTVVNLTKKSSGVTDSAVVCHKLSYPYAVFYCHYTQHTRVYKVSLLGVDGTKADVAAACHTDTSAWNPKHLAFQVLKVKPGTVPVCHFLPQDHVVWVSKY 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2378504 2380623 + MELO3C003592.2.1 Cme04g00305 324566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00305 391 MobiDBLite consensus disorder prediction 97 132 - -
Cme04g00305 391 ProSiteProfiles BURP domain profile. 176 390 IPR004873 -
Cme04g00305 391 Pfam BURP domain 175 388 IPR004873 -
Cme04g00305 391 PANTHER BURP DOMAIN PROTEIN USPL1-LIKE 11 388 IPR044816 -
Cme04g00305 391 PANTHER BURP DOMAIN-CONTAINING PROTEIN-RELATED 11 388 - -
Cme04g00305 391 SMART BURP_2 174 390 IPR004873 -
Cme04g00305 391 MobiDBLite consensus disorder prediction 68 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00305 - - - cmo:103503725 738.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02248 Cme-Chr3:29233069 Cme04g00305 Cme-Chr4:2378504 8.11E-32 dispersed
Cme04g00305 Cme-Chr4:2378504 Cme11g00185 Cme-Chr11:2232677 8.05E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g342 Blo01g01710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00305
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010252 2 1 0 2 1 1 1 0 1 0 1 1 0 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 4 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00305 Cme_Chr04 FPKM 9.030392 11.256151 11.199791 12.250897 13.222924 11.847559 13.025038 7.56586 7.265325 6.811686