Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00306 ATGGTAGAAACAGAGCAAGTGGAGAACGTTGAATTTCAATGGGGCAAAAAGAAAGGAATTGGTGGGAAGAAAAAGGACGTGACCTTTTATGAGTCTTTTACATACGATGGTGTAGAATATTTTCTCTACGACTCTGTCTACCTATATAAGGAAGGTGAACCAGAGCCTTACATTGGTAAACTTCTTAAAATCTGGCAGAATCCTGATAAGACAAAGAAAGTAAAAATTCTTTGGTTTTTTCGATCTTGTGAGATTCTTAATTATCTTGGAGGTGTAGACACACGGGAGAATGAATTATTTTTGGCATCCGGCGATGGTATTGGTCTTGCCAATGTTAATTCTCTGGAAGTACTTGCTGGAAAGTGCAATGTTCTCTGCATTTCAAATGACAGCAGAAATCCGCAACCTTCGGATGAAGCACTCAAAAAGGCCGATTTTGTATTTTGTCGTACATTTGATGTTGGAAAACAAGAGGTCTGCAGTGAGATATGTGATAAAATTGCTGGAGTGGAAGTTAAACTTTTACTTAATAAAGCAGATACGTCAAAAGATGTTAAGAGGACCGATAAGGATGGGAAAGATGCAAGTGGCATTGCAATTGTAAAGACTGAATTAGAAGATCCTTCTGGAAGGGACATTTCTAATGGAAAATTGACTGTGACGACTAATGACAGCTCTCTTGAGAAGGCCACAAAGGAAAATGTTGATTTGAAGGGGTCTATAGAGAAATCCTCCAATGAGGAGAAGTCGAGTGCACATGCAATCGAAGCAGGAATTGGAATGGGTAAAACTAGTAGTATTAGTAAACATGAAAACATCTTAGGTGATAAGGTCCCTCCAAGGATCAAAATTGATTCTAATGAGAAGCCTGGTAACGCTAAGGATGTCGAAGGTAGAGTCAAAAGTCCAAGGGAATCTGCTGAAGTTGAACATAGGCCAGTGAAGAAGGCAAAACTAGACAGCTCTGTTCAGTTATCTCCTGGAATGACCAAGAATGACATTGAAAAGCTTGGTATCGATCACAACAATGGTGACACACTGGCTTCCTCACCTAAAGTTCTTGTTTCTGAAGATGCTTCCAGAGCCAAAAATGTAAAAGATTCTCGTGAAACCAAGGATAGTTTTTTAAAGAAGCCCAAGCTAGATGAGAAGCCAACAAAGGTTTCTAATGGCAAGAACCTAAAGCCCTCTTCCCTAATAGACGGTGAAGTTGTGGAAGTTACTAGAAGGCCAGATGCTGATAGAAGCAGATGGTTCAAGGGACTTCCGTGGGAAGAAAGAATAAAAGATGCACACGAGCAAGGAACACTTGTTCTAATTCAGAATTTGGATCCATCTTACACTTCCGGTGAAGTGGAGGATATTGTCTGGCATGCCTTCAATGAGAGTTGCACAGCTAAGATGATTCAGCGAACTGCAACTTCTATGCCTCACATAGGTCAAGCTTATGTTGTATTCAAAACCAAGGAAGCAGCAGAGAAAGTGGTCAGAAAATTACATGAAGGTTGCTTATTACTTGCAGATGGAAGTGTTCTTGTTGGTAGCTTTGAGACTCCTCATCTTTCGTCAAAGAAACAAACATTTTTTGGGCATCACTGTATCGATAAGCTTAGACATCAAATGCAACGTGAGATGAAAGAAGCTGTATCAACTTCGCATTGTTCTCAGCCAAATACAATAGAATATGACATGGCCATGGAATGGTGTTTACTACAAGAAAGATCAGAACTTGTCTGCAAACAGTTGTTCAAGCAACAAGAAGAGGAGTTGAGAAAACTCAAGAGCAAGCTCAAATCTAGATGA 1803 39.88 MVETEQVENVEFQWGKKKGIGGKKKDVTFYESFTYDGVEYFLYDSVYLYKEGEPEPYIGKLLKIWQNPDKTKKVKILWFFRSCEILNYLGGVDTRENELFLASGDGIGLANVNSLEVLAGKCNVLCISNDSRNPQPSDEALKKADFVFCRTFDVGKQEVCSEICDKIAGVEVKLLLNKADTSKDVKRTDKDGKDASGIAIVKTELEDPSGRDISNGKLTVTTNDSSLEKATKENVDLKGSIEKSSNEEKSSAHAIEAGIGMGKTSSISKHENILGDKVPPRIKIDSNEKPGNAKDVEGRVKSPRESAEVEHRPVKKAKLDSSVQLSPGMTKNDIEKLGIDHNNGDTLASSPKVLVSEDASRAKNVKDSRETKDSFLKKPKLDEKPTKVSNGKNLKPSSLIDGEVVEVTRRPDADRSRWFKGLPWEERIKDAHEQGTLVLIQNLDPSYTSGEVEDIVWHAFNESCTAKMIQRTATSMPHIGQAYVVFKTKEAAEKVVRKLHEGCLLLADGSVLVGSFETPHLSSKKQTFFGHHCIDKLRHQMQREMKEAVSTSHCSQPNTIEYDMAMEWCLLQERSELVCKQLFKQQEEELRKLKSKLKSR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2382541 2391881 + MELO3C003593.2.1 Cme04g00306 324567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00306 600 MobiDBLite consensus disorder prediction 229 250 - -
Cme04g00306 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 436 519 IPR000504 GO:0003723
Cme04g00306 600 ProSiteProfiles BAH domain profile. 38 163 IPR001025 GO:0003682
Cme04g00306 600 MobiDBLite consensus disorder prediction 229 395 - -
Cme04g00306 600 PANTHER PROTEIN ANTI-SILENCING 1 1 599 - -
Cme04g00306 600 SUPERFAMILY RNA-binding domain, RBD 430 500 IPR035979 GO:0003676
Cme04g00306 600 Coils Coil 227 247 - -
Cme04g00306 600 Gene3D - 8 160 IPR043151 -
Cme04g00306 600 CDD RRM_SF 438 500 - -
Cme04g00306 600 PANTHER PROTEIN ANTI-SILENCING 1 1 599 - -
Cme04g00306 600 MobiDBLite consensus disorder prediction 359 389 - -
Cme04g00306 600 MobiDBLite consensus disorder prediction 274 318 - -
Cme04g00306 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 438 501 IPR000504 GO:0003723
Cme04g00306 600 Gene3D - 424 520 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00306 - - - csv:101208860 1095.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00306 Cme-Chr4:2382541 Cme04g01069 Cme-Chr4:14560389 6.28E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g361 Blo01g01711 . . . . Bpe02g00232 . Bma01g02490 . . Cma01g01593 . Car09g00478 . . . Cpe06g00414 . . . . . . . . . . . . . . Cone4ag1541 . . . Lsi04g02217 . . . . . . . . . . . Sed05g1617 Cmo01g01641 Cmo09g00537 . . Car01g01212 . . Cpe02g00384 Bhi09g02408 Tan01g3769 Cmetu04g2116 . Hepe01g2111 Mch11g0649 . . . . . . . . . . . Cme04g00306
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004249 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00306 Cme_Chr04 FPKM 7.021331 7.331559 0.163479 0.351662 1.047082 1.061448 1.22154 0.240987 0.263359 0.329519