Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00308 ATGGCGATCTCAAAGCTCGCCATTCTATCACTTTTTCTAGCCCTAGTCTTCACGCAGCTCCGCGCCGATGAATCGCTTGATTTAGAGGCGGAACATATAGTTGAAGTCGTTAGATCGGATGATTCTGAGTTTTCTGATTTGAAGCTTGAATTGGACCAGCTCAAGTTCAAGATCCAAAAGCTTGAATCCGACCTTGATGTAAAAAACCAAGAATTGAAGAGAAAGGACGAGGTAATAGCTCAGAAGGAAAAAATCATCAGTGCCAAGCTAGATAGCATTTCGTTGCTTGAAAGTGAGATTGCTTCTCTTCAGAAAAAGGGGAAATTAGATGCTGAGGAGCAGGTTGGAAAGGCATATTCACGTGCTCATGAATTAGAAAGACAGGTTGATGATCTCAAAAGGCAATTGGAGATGCTGAATGGGGAGAAAGAATCCTGGGAAACTGTAGCAAATGAAGCTGAGAAGAAAACACTTGAAGCCAGTTTAAGATTAGAGAGTCTCCAGAAGATTCACGAAGAACAGAAGAGTAAAATTCGTGTGACTGAACGGGCTCTTGAAGTCTCCAAGGAAGAGATGAGGAAGGCAAAGTTTGAGGCAGCTTCAAAAATTAAAGAGTTGACAGAGGTTCATGGTGCGTGGCTCCCACCTTGGCTTGCTTCACATTATGACCAGTTTCAGTCTTTGATCAGAACACATTGGAATGAGCATGCAAAACCTGCAATTGATGTAGTAATTCAAAAGGCTTCAGATAAGACGGCACAAGCAGCAAAATGGGCCGAACCCCATGTCAAAACAGTGAAAATAAAATATATCCCGGTCGTGAAGGAAAGATGGTTGGTAGTAAAAACAAATGTTAAACCACATATCGAGACATTAACTGCAAAAACTGTAGAATTTTATCAAACATCAAAGAGTGTGATAACTCCTTATGCAGTTAAATCTAAAGAAGCTATTCGTCCGTACTATCTGGAAGTTAAGAAATTCAGCAAGCCATATATTGATCAAGTTGCTACCGTTACGAAACCCCACGTAGAAAAGGTTAGGGTGGTCCTGAAGCCCTATACAAAGAAATTAGTTCGTGGATATGGAAAATTTCTAAAATCTGCGGCTGTATATCATCATAAGGTTCAAGGTGCCGTTAAAGAGACTCTCAATAAACATGAATTGACCAAGCCACTCGCGACTAGAGAGTTGGAATGGTTTGCGGCTTCTGCTATATTGGCTCTTCCTATTATTTTTCTGTTCAATATGATCTCTGCCCTTTTCTGGAAGAAAACAAAGAAACCTACTCGAAACACCGTCCACAATGCACGTCGTAAGGGTAAAAGAGCGCATTCTGACAAATAG 1347 40.91 MAISKLAILSLFLALVFTQLRADESLDLEAEHIVEVVRSDDSEFSDLKLELDQLKFKIQKLESDLDVKNQELKRKDEVIAQKEKIISAKLDSISLLESEIASLQKKGKLDAEEQVGKAYSRAHELERQVDDLKRQLEMLNGEKESWETVANEAEKKTLEASLRLESLQKIHEEQKSKIRVTERALEVSKEEMRKAKFEAASKIKELTEVHGAWLPPWLASHYDQFQSLIRTHWNEHAKPAIDVVIQKASDKTAQAAKWAEPHVKTVKIKYIPVVKERWLVVKTNVKPHIETLTAKTVEFYQTSKSVITPYAVKSKEAIRPYYLEVKKFSKPYIDQVATVTKPHVEKVRVVLKPYTKKLVRGYGKFLKSAAVYHHKVQGAVKETLNKHELTKPLATRELEWFAASAILALPIIFLFNMISALFWKKTKKPTRNTVHNARRKGKRAHSDK 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2396272 2401882 - MELO3C003595.2.1 Cme04g00308 324569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00308 448 Gene3D - 41 227 - -
Cme04g00308 448 PANTHER OS08G0519400 PROTEIN 1 448 - -
Cme04g00308 448 PANTHER OS08G0519400 PROTEIN 1 448 - -
Cme04g00308 448 Gene3D - 279 400 - -
Cme04g00308 448 Coils Coil 164 191 - -
Cme04g00308 448 Coils Coil 108 156 - -
Cme04g00308 448 SUPERFAMILY Apolipoprotein A-I 235 381 - -
Cme04g00308 448 Coils Coil 44 78 - -
Cme04g00308 448 SUPERFAMILY Tropomyosin 37 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00308 - - - csv:101216465 833.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01719 Cme04g00308 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01719 Cme-Chr3:25778042 Cme04g00308 Cme-Chr4:2396272 3.38E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g229 . . . . . . . . . . Cma01g01592 . . . Sed03g1505 . Cpe06g00493 Bhi04g01132 Tan02g2588 Cmetu03g0558 . Hepe10g0336 . Lcy13g1380 . . . . . . . . . Cone17ag1131 Cone20ag0617 . . . Cme03g01719 Blo17g00065 Blo18g00078 . . . . . . . Cmo01g01640 . Cma09g00546 . . . . Cpe02g00385 . . . . . . . Cla08g01244 Cam08g1702 Cec08g1282 Cco08g1403 Clacu08g1399 . Cre08g1184 Lsi08g01106 Csa02g02296 . Cme04g00308
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001961 2 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 4 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00308 Cme_Chr04 FPKM 5.215962 4.87458 2.12399 3.131371 10.652621 9.686619 12.88765 3.3486 3.604295 2.309426