Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00310 ATGGCATGGGGGAATATCTACAGAAGAAGAATGAAAGTGTTCGCTCTGGCTTTAGTGATTTACCTGGATTATAAGGCATTAGAACAAAGAGAGAAGTGGATTAGCAAGTCTAAAAGATCAGCCTTATGGGAAAAAGCACATGAACGTAATGCAAAGCGCGCATTGAGTTTGATAATAGAGTTGGAAGGTTTGTGGGTGAAATTTGGACAGTATTTATCTACTCGAGCAGATGTTGTCCCTGATGCATACATACGGCTCCTCAAACAGCTACAAGACTCTCTCCCTCCTCGCCCTCTACAAGAGGTTCGCCAGACCATACAGAAAGAGTTGGGGAAACCAATCACTGATATATTTGCAAACTTTGTGGAAGCACCCTTAGCAACTGCATCTATAGCCCAAGTGCACCGAGCAACTTTACTTAATGGAAGGGAGGTGGTTATCAAAGTGCAACATGAGGGCATAAAGGCAGTTATATTGGAGGACTTGAAGAATGCAAAGGCGATTGTTGATTGGATAGCCTGGGCAGAGCCACAGTATGACTTTAATCCCATTATTGATGAATGGTGCCGAGAAGCTCCCAAAGAGCTTGATTTCAATCTTGAAGCTGAGAACACCAGGACAGTATCTAGAAATCTTGGCTGCTCGGACGGCGATAAAGGCCTTGGCGCTGTGAATGTTTTTATTCCGGAAGTTGTTCAGTCAACAGAGAAAGTTCTAATTTTAGAGTATATGGATGGCATACGTTTAAATGACTCTGCTAGTCTGGAAGCATATGGTATTGACAAACAAAAAGTTGTTGAAGAAATCACACGGGCTTATGCACACCAAATTTATGTCGATGGATTTTTCAATGGCGACCCCCATCCTGGGAATTTTCTCGTCAGCAAGGAACCTCCTCATTGTCCAATTTTGCTCGACTTTGGGCTTACCAAGAAGTTACCAACCACCATGAAACAAGCACTGGCAAAGATGTTTTTAGCCGCTGCAGAGGGTGACCATGTTGCTCTTCTATCTTCCTTTGCTGAAATGGGACTTAAGTTGCGTCTTGATATGCCAGAGCAAGCAATGACGGTGACAAATGTATTCTTTCGAGCAACAACTGCTGCAAAAGAATCACAGGACACCTTTAGAGCTATGACGGAGCAAAGATCAAAGAATGTAAAAGAAATACAAGAAAAAATGAAAATGAATCAAAAGGAGGCTAAACGTTTCAATCCTGTTGATGCGTTTCCTGGTGATATTATAATATTTGCACGGGTCCTTAATCTTCTAAGAGGTCTTTCTTCCTTGATGGATGTTCGCATAGTATATCTAGATATCATGAGACCGTTTGCTGAATCTGTTCTACAAGGAAGTATTAGCAAGGAGCCAAACGTAAATGATCAATGGATCTGGAAAACACCTGTCCATTCTGATGTTGAAGCTAAGCTGAGACAACTCTTAATCAAGCTAGGGATTGAGGATAAAATACTTGGAATCCAGGTGTGTGCCTACAAAGATGGAGAGGTCATTATTGATACTTCTGCTGGAGTTCTGGGGAAATATGATCCTCGTCCAGTTCAGCCCGATAGTCTTTTTCCAGTGTTCTCTGTAACAAAGGGCATCACAGCTGGAATGTTGCATTGGCTAGTTGATAATGGGAAACTTAACCTTGCGGAAAATGTTACTAATATCTGGCCGGAATTTGGATCGAATGGTAAAGATATAATAAAGGTCTACCACGTGCTTAACCACACTTCAGGTCTGCATAATGCCACGGTGGATGTTAGGGAAAATCCTTTGGTAATTTGTGACTGGGAGGAATGTTTAAATTGCATGGCTAATTCAATTCCAGAGACCGAACCTGGCCAGGAGCAGTTGTATCACTATCTATCCTATGGCTGGCTATGTGGTGGAATCGTTGAGCATGCAACGGGGAAGAAATTCCAAGAGATTCTTGAAGAAGCATTAGTTAAGCCACTCCATGTTGAAGGCGAGCTATACATCGGAATCCCTCCCGGAGTTGAAACTCGTCTTGCAACACTAACACCAAATCTTGACGATATTCAAAAGTTCTCCGGGATCAATCGTTCAGACTTGCCCTCCACCTTCCAGCCAGCCATGATAGCCCAGTTTGTCACAACTTTGACACCTCTATTTAACATGCTCAATACTCGCCGTGCCATCATACCAGCCGCCAACGGACATTGCTCTGCTCGTGCATTGGCACGTTATTATGCAGCCTTGGCCGATGGTGGCGTGATACCACCACCACATTCCTCATCCTCCCAACCAGCTCTCGGAAGCCACCCTCACATCCCTAAATTCACTTCTGAGATTCCTAAGAAGCAGAAAGCTGCCAGAAGCAAGGACGTTCATACCAACGTAAATAACAACCACGAAAAGAATTCAAGTTCCACCGAAACAGCAGAGAATAATAATAGTATCTTCAGGACTACTAGCAATACTGGTTACACTAGACTCCTTAACGATAGCAGCAGCTGTAGCAATACCAATGATCCCAGCACAAGAGTTGATATAAGGCATCCAAATGATGGAAATAAGTTTGTAGGCAACATATACAAAAACCCTAGAATTCATGATGCCTTCTTGGGTATAAGGGAATATGAGAATTACACCATTCCAAATGGGAAATTTGGATTAGGTTTCTCAAGGTTGAGATCAGAGGAAGGTTCTTTTATTGGGTTTGGTCATTCAGGAATGGGCGGATCCACAGGTTTTTGTAATATAGATCACAGGTTCGCGATCTCCGTAATGGTCAACAAATTGTCTCTCGGGGGTGTGACCGCCAGCATAATACAGCTCGTTTGTTCCGAGCTGAATATCCCGTTACCAGTGGAATTTTCATCGCCTGGGATTTCTGATGGACAGCATAGTATAGTGGAAACTCCTTTGATTAACTGA 2904 43.01 MAWGNIYRRRMKVFALALVIYLDYKALEQREKWISKSKRSALWEKAHERNAKRALSLIIELEGLWVKFGQYLSTRADVVPDAYIRLLKQLQDSLPPRPLQEVRQTIQKELGKPITDIFANFVEAPLATASIAQVHRATLLNGREVVIKVQHEGIKAVILEDLKNAKAIVDWIAWAEPQYDFNPIIDEWCREAPKELDFNLEAENTRTVSRNLGCSDGDKGLGAVNVFIPEVVQSTEKVLILEYMDGIRLNDSASLEAYGIDKQKVVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKEPPHCPILLDFGLTKKLPTTMKQALAKMFLAAAEGDHVALLSSFAEMGLKLRLDMPEQAMTVTNVFFRATTAAKESQDTFRAMTEQRSKNVKEIQEKMKMNQKEAKRFNPVDAFPGDIIIFARVLNLLRGLSSLMDVRIVYLDIMRPFAESVLQGSISKEPNVNDQWIWKTPVHSDVEAKLRQLLIKLGIEDKILGIQVCAYKDGEVIIDTSAGVLGKYDPRPVQPDSLFPVFSVTKGITAGMLHWLVDNGKLNLAENVTNIWPEFGSNGKDIIKVYHVLNHTSGLHNATVDVRENPLVICDWEECLNCMANSIPETEPGQEQLYHYLSYGWLCGGIVEHATGKKFQEILEEALVKPLHVEGELYIGIPPGVETRLATLTPNLDDIQKFSGINRSDLPSTFQPAMIAQFVTTLTPLFNMLNTRRAIIPAANGHCSARALARYYAALADGGVIPPPHSSSSQPALGSHPHIPKFTSEIPKKQKAARSKDVHTNVNNNHEKNSSSTETAENNNSIFRTTSNTGYTRLLNDSSSCSNTNDPSTRVDIRHPNDGNKFVGNIYKNPRIHDAFLGIREYENYTIPNGKFGLGFSRLRSEEGSFIGFGHSGMGGSTGFCNIDHRFAISVMVNKLSLGGVTASIIQLVCSELNIPLPVEFSSPGISDGQHSIVETPLIN 967
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2407696 2418021 + MELO3C003597.2.1 Cme04g00310 324571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00310 967 Pfam ABC1 atypical kinase-like domain 89 337 IPR004147 -
Cme04g00310 967 MobiDBLite consensus disorder prediction 749 810 - -
Cme04g00310 967 Gene3D - 474 786 IPR012338 -
Cme04g00310 967 MobiDBLite consensus disorder prediction 823 843 - -
Cme04g00310 967 PANTHER ABC1 FAMILY PROTEIN 1 952 - -
Cme04g00310 967 Pfam Beta-lactamase 481 760 IPR001466 -
Cme04g00310 967 SUPERFAMILY beta-lactamase/transpeptidase-like 476 751 IPR012338 -
Cme04g00310 967 PANTHER ABC1 FAMILY PROTEIN 1 952 - -
Cme04g00310 967 CDD ABC1_ADCK3-like 89 340 - -
Cme04g00310 967 MobiDBLite consensus disorder prediction 823 837 - -
Cme04g00310 967 MobiDBLite consensus disorder prediction 791 810 - -
Cme04g00310 967 MobiDBLite consensus disorder prediction 769 790 - -
Cme04g00310 967 SUPERFAMILY Protein kinase-like (PK-like) 91 312 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00310 K08869 ADCK, ABC1; aarF domain-containing kinase - csv:101216220 1840.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00310 Cme-Chr4:2407696 Cme08g00817 Cme-Chr8:5408094 5.68E-46 dispersed
Cme05g00402 Cme-Chr5:3367530 Cme04g00310 Cme-Chr4:2407696 1.36E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g230 . . . . . Bpe02g00276 . . . . Cma01g01591 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo18g00003 . . . . . . . Cmo01g01639 . Cma09g00545 . . . . Cpe02g00386 . . . . . . . . . . . . . . . Csa02g02327 . Cme04g00310
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008509 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00310 Cme_Chr04 FPKM 32.261673 38.732052 23.362545 23.251909 26.718149 27.821764 28.113489 28.739365 26.14217 27.207642