Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g00312 | ATGGATTTAAATTCAAAGAAGTCCAACAAAATCAGAGACATCGTACGGCTTCAACAGATCCTGAAGAAATGGCGGAAGCTAGCGAACTCATCGAAGGCGGCGAATAAAATCACCGGCACGGCGGCGGGGCCTGCTGGAAAGAGCATAAAGTTTCTGAAACGGACGTTATCGTCGGCCGGCGGGGAAAGCTGCGGCGGGGCAGTGCCGAAAGGGTATTTGGCAGTGAGTGTAGGGGAAGAGCAAAAGCGATTTGTTATACCGACGTCGTATTTAGGGCATCCGGCGTTTGAGATTCTGTTGAGAGAAGCGGAGGAGGAATTTGGGTTTCAACAAACGGGGGTTTTGAGGTTGCCGTGTGAAGTGTTTGTGTTTGAAAATGTGGTGAAATTGGTGGAGGAAAAGAAGAAAGGGGATTTGTTGTTAGGAGGGGAAGAGGTTTTGAATTTTTGTTCATTGGAAACGTTGCAGTTAACGCCGTCATCACACCGCCCACAGAGTCCAATGTGCAGATAG | 513 | 48.73 | MDLNSKKSNKIRDIVRLQQILKKWRKLANSSKAANKITGTAAGPAGKSIKFLKRTLSSAGGESCGGAVPKGYLAVSVGEEQKRFVIPTSYLGHPAFEILLREAEEEFGFQQTGVLRLPCEVFVFENVVKLVEEKKKGDLLLGGEEVLNFCSLETLQLTPSSHRPQSPMCR | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 2445454 | 2445989 | + | MELO3C003599.2.1 | Cme04g00312 | 324573 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g00312 | 170 | Pfam | Auxin responsive protein | 23 | 130 | IPR003676 | GO:0009733 | |
| Cme04g00312 | 170 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 170 | IPR003676 | GO:0009733 | |
| Cme04g00312 | 170 | PANTHER | SAUR FAMILY PROTEIN | 7 | 170 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme01g01192 | Cme-Chr1:15145698 | Cme04g00312 | Cme-Chr4:2445454 | 1.53E-10 | dispersed | |
| Cme01g02727 | Cme-Chr1:34475569 | Cme04g00312 | Cme-Chr4:2445454 | 2.27E-45 | dispersed | |
| Cme04g00312 | Cme-Chr4:2445454 | Cme10g01655 | Cme-Chr10:22665754 | 1.40E-26 | dispersed | |
| Cme04g00312 | Cme-Chr4:2445454 | Cme01g01314 | Cme-Chr1:16480066 | 6.02E-23 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g00312 | K14488 | - | csv:101216710 | 276.174 |