Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00314 ATGGGGATTCAACCGGAGACGTCGTCGGAGAATCGTTTGGTATTTGCTTATTACATCACCGGCCATGGCTTCGGCCACGCCACTCGCGTTATCGAGGTTGTTCGGCACCTGATACTTGCTGGCCACGAGGTGCACGTCGTTTCTGCTGCCCCTGAGTTTGTTTTTACTTCTGCAATCCAATCCCCTAGGCTATTCATTCGAAAGGTATTGTTGGACTGTGGGGCTGTCCAGACGGATGCATTGACAGTAGATCGATTGGCATCCTTAGAGAAGTATCACGAGACAGCTGTTGTGCATCGGCATACAATTTTGGAAACAGAAGCAGAATGGCTGAAGTCAATCAAAGCTGACTTAGTGGTTTCTGATGTTGTACCAGTTGCTTGCCGTGCTGCTGCTGATGCTGGGATTCGCTCTGTTTGTGTTACCAACTTCAGTTGGGATTTCATCTATGCAGAGTATATAATGGATGCCGGGCATCACCATCGTTCGATAGTCTGGCAGATTGCAGAGGATTATTCACATTGCCAGTTCCTGATCCGCCTCCCAGGATACTGCCCAATGCCTGCTTTCCGTGATGTTGTTGATGCACCTCTTGTTGTCAGAAGGCTGCACAAAACACGGCAGGAGGTGAGGAGTGAACTGGGTATTGGAGATGATGTGAAGTTAGTTATCCTTAATTTTGGCGGACAGCCTGCAGACTGGAAGTTGAAAGATGAATATTTACCCTCTGGTTGGCTTTGCCTGGTTTGTGGTGCTTCAGACACTGAAGAGGTTCCACCAAACTTCATTAAGCTCGCAAAAGATGCGTATACACCAGATCTGATAGCTGCTTCTGATTGCATGCTTGGAAAAATTGGTTATGGAACCGTTAGTGAAGCATTGGCATACAAAGTACCTTTTGTCTTTGTACGAAGAGATTATTTTAACGAAGAACCATTCTTAAGGAGTATGCTTGAGTATTATCAAAGTGGGGTTGAGATGATTAGAAGGGATTTACTCACTGGTCAATGGAAACCTTATCTTGAGCGTGCTATTAGTTTGAAACCGTGCTATGTGGGAGGCGTCAATGGTGGTGAGGTTACAGCCCATATTTTGCAAGAGACAGCTGCCGGGAAAAATTGTACATCGGACAAGTTTAGTGGGGCAAGAAGATTGCAAGATGCCATAATTCTAGGATATCAACTCCAAAGGGTTCGCGGTCGAGATCTTCTCATTCCAGAGTGGTACGCGAATGCTGAAAATGAATTTGCCCTTTCGATAGGATCACCAACTTGCCAAGTGGATGAGAGAAGCTCGCCAATAGACTATTCCATCGAGGATTTTGAGGTGCTTCATGGTGACGTTCAAGGTTTTCCTGACTCAGTAAATTTCTTAAAAAGCTTGGTAGAATTAGATTCTTTGAATGACAATGGAAGCACAGAGGTACGGCGGGAACAGAAGGCTGCTGCTGGACTATTTAATTGGCAGGAAGACATTTTTGTAACCAGAGCACCTGGAAGGTTGGATGTCATGGGGGGCATAGCTGATTACTCTGGAAGCCTTGTCTTGCAGATGCCAATAAGAGAAGCCTGTCATGTTGCACTGCAAAAAAACCATCCTAGTAAACATAGGCTTTGGAAGCATGTACAAGCTCGACAGGATTCCAGCGTACAAGGCCAAACACCGGTTCTTCAAATAGTATCGTATGGGTCTGAATTCAGCAATCGTGCCCCAACCTTCGATATGAATCTATCTGATTTCATGGACGGAGGGAAGCCAATTTCGTATGAGAATGCAAGAAAATACTTTAGCAAAGATCCAGCACAAAAGTGGGCAGCATATGTTGCAGGGACCATCTTGGTTTTAATGAGAGAGTTGGGTGTACGATTTGAAGACAGTATCAGTATGCTGGTTTCCTCAGCAGTGCCAGAAGGTAAAGGTGTATCTTCATCTGCCTCCGTGGAAGTTGCCTCCTTATCTGCTATAGCTGCAGCACATGGATTGAGTATCAGTTCAAGAGATATAGCTCTACTTTGCCAAAAGGTGGAAAATTGCATTGTGGGAGCTCCATGTGGTGTTATGGACCAGATGACTTCAGCATGTGGAGAAGCCAACAAACTACTAGCAATGGTGTGCCAGCCTGCTGAGGTACTTGGACTTGTTGAGATACCAAGCCATATTCGATTTTGGGGCCTTGATTCAGGAATACGTCACAGTGTTGGTGGTGCAGACTATGGTTCTGTAAGGATAGGAGCGTTTATGGGTAGAGAGATCATCAAGTCTACAGCATCTTCTATGTTACCAGTGTCATCTTCCGTCATCAATGGTGTAAGTAATTATGATTCTGAGGATAATAGTGTGGAGTTGCTTCAAACTGAATCTTCATTGGACTACTTGTGTAACCTTCCGCCTCACAGGTATGAAGCTATTTATGCTAAGTTACTTCCTGAGTCCATTACTGGGGAGGCTTTTGTGGAGAAATTTGTTAATCACAATGATCCAGTCACCGTGATCGATGAGAAGCGTAGCTATGCAGTTAGAGCTTCTGCAAGACACCCTATATATGAAAACTTTCGTGTCAAGGCCTTCAAAGCATTGCTTACTTCCGCAACTTCTGATGAGCAACTTACATCCCTTGGAGAGTTGTTATATCAGTGCCATTACAGTTACAGTGAGTGTGGGCTAGGGGCAGACGGGACCGATAGGCTTGTAGAGTTGGTACAAAAGGCCCAGCACTCTAAGTCTGAAGATGGGACCTTATATGGAGCAAAGATTACTGGCGGCGGATGTGGCGGAACTGTTTGTGCCATTGGCAAAAACAGCTTACGCACCACCCAGCAGATCATTGAGATTCAACAAAGGTACAAAGATGCAACGGGTTACTCTCCCTTTATTTTCGAAGGTTCTTCTCCTGGCGCAGGAAAATTTGGGCATTTGAGAATAAGAAGACGCAGCTTTGGCTCTCCCAAAATTAAATAA 2958 45.1 MGIQPETSSENRLVFAYYITGHGFGHATRVIEVVRHLILAGHEVHVVSAAPEFVFTSAIQSPRLFIRKVLLDCGAVQTDALTVDRLASLEKYHETAVVHRHTILETEAEWLKSIKADLVVSDVVPVACRAAADAGIRSVCVTNFSWDFIYAEYIMDAGHHHRSIVWQIAEDYSHCQFLIRLPGYCPMPAFRDVVDAPLVVRRLHKTRQEVRSELGIGDDVKLVILNFGGQPADWKLKDEYLPSGWLCLVCGASDTEEVPPNFIKLAKDAYTPDLIAASDCMLGKIGYGTVSEALAYKVPFVFVRRDYFNEEPFLRSMLEYYQSGVEMIRRDLLTGQWKPYLERAISLKPCYVGGVNGGEVTAHILQETAAGKNCTSDKFSGARRLQDAIILGYQLQRVRGRDLLIPEWYANAENEFALSIGSPTCQVDERSSPIDYSIEDFEVLHGDVQGFPDSVNFLKSLVELDSLNDNGSTEVRREQKAAAGLFNWQEDIFVTRAPGRLDVMGGIADYSGSLVLQMPIREACHVALQKNHPSKHRLWKHVQARQDSSVQGQTPVLQIVSYGSEFSNRAPTFDMNLSDFMDGGKPISYENARKYFSKDPAQKWAAYVAGTILVLMRELGVRFEDSISMLVSSAVPEGKGVSSSASVEVASLSAIAAAHGLSISSRDIALLCQKVENCIVGAPCGVMDQMTSACGEANKLLAMVCQPAEVLGLVEIPSHIRFWGLDSGIRHSVGGADYGSVRIGAFMGREIIKSTASSMLPVSSSVINGVSNYDSEDNSVELLQTESSLDYLCNLPPHRYEAIYAKLLPESITGEAFVEKFVNHNDPVTVIDEKRSYAVRASARHPIYENFRVKAFKALLTSATSDEQLTSLGELLYQCHYSYSECGLGADGTDRLVELVQKAQHSKSEDGTLYGAKITGGGCGGTVCAIGKNSLRTTQQIIEIQQRYKDATGYSPFIFEGSSPGAGKFGHLRIRRRSFGSPKIK 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2451864 2465954 + MELO3C003601.2.1 Cme04g00314 324575

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00314 985 PRINTS Mevalonate kinase family signature 497 521 - -
Cme04g00314 985 PRINTS Mevalonate kinase family signature 633 655 - -
Cme04g00314 985 PRINTS Mevalonate kinase family signature 676 695 - -
Cme04g00314 985 PRINTS Mevalonate kinase family signature 915 932 - -
Cme04g00314 985 PANTHER L-ARABINOKINASE 13 975 - -
Cme04g00314 985 Pfam Galactokinase galactose-binding signature 489 530 IPR019539 -
Cme04g00314 985 SUPERFAMILY GHMP Kinase, C-terminal domain 720 968 IPR036554 -
Cme04g00314 985 Gene3D - 478 723 IPR014721 -
Cme04g00314 985 PIRSF Gal_kin_glcsltr 3 979 IPR012369 -
Cme04g00314 985 Pfam GHMP kinases C terminal 861 937 IPR013750 -
Cme04g00314 985 Gene3D - 828 953 IPR036554 -
Cme04g00314 985 Pfam GHMP kinases N terminal domain 630 695 IPR006204 GO:0005524
Cme04g00314 985 SUPERFAMILY Ribosomal protein S5 domain 2-like 490 710 IPR020568 -
Cme04g00314 985 Gene3D Glycogen Phosphorylase B; 208 347 - -
Cme04g00314 985 PANTHER MEVALONATE KINASE/GALACTOKINASE 13 975 - -
Cme04g00314 985 Gene3D Glycogen Phosphorylase B; 8 163 - -
Cme04g00314 985 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 20 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00314 K12446 E2.7.1.46; L-arabinokinase [EC:2.7.1.46] - csv:101209596 1888.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00314 Cme-Chr4:2451864 Cme07g01113 Cme-Chr7:14135030 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g238 . . . . . . Bma04g00357 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma09g00543 . . . . . . . . . . . . . . . . . . . . . . Cme04g00314
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003094 1 4 1 1 1 2 2 2 2 2 2 2 1 2 2 1 2 1 2 2 2 2 2 2 1 2 2 1 1 2 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00314 Cme_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 3.236881 0.0 0.0 0.0 0.0