Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00317 ATGGTGTTCTGGGTATTTGGGTATGGCTCATTGGTGTGGAATCCAGGATTTGAATTTGATGAGAAAATTATAGGCTATATCAAGGATTATAAGCGTGTTTTCGACCTCGCATGTATTGATCACAGAGGTACTCCAGAAAATCCTGCTAGGACTCTTACTTTGGAACAGGAAGAAGGAGCTATTTGTTGGGGAGCAGCTTACTGCGTGCGGGGGACTCCTGAAAGGGAACGAGCTGCAATGGAGTATTTGGAGCATAGAGAATGTGAATATGATCAAAAGACACTTGTTAACTTTTACAAGGAAGAGAACTCTATTGAACCTGCGCTTACAGGAGTAATTGTTTTCACGTCCACTCCGGACAAAGAAGTGAACAAATACTACTTGGGCCCTGCTCCATTAGAGGATATGGCTAGACAAATTGCAACTGCTGTTGGGCCTTGTGGAAACAATAGAGACTATATTTTCATGTTAGAAAAGGCATTATTTAACATAGGTCACGAGGAGGAAATGGTAATCGAGCTTGCTAACGAGGTGAGAAAAGTCCTCGACCTCCTCGAGAACGGAATCTCAAGGGATAACAAACTGCTTGGAGCAGCGCCTCACATAGTACTCAAGTCACACATACCATCCTTGGAACTGCAACCGCTTCCAGAAGCCATAGCCACAGACTCCTAA 675 43.85 MVFWVFGYGSLVWNPGFEFDEKIIGYIKDYKRVFDLACIDHRGTPENPARTLTLEQEEGAICWGAAYCVRGTPERERAAMEYLEHRECEYDQKTLVNFYKEENSIEPALTGVIVFTSTPDKEVNKYYLGPAPLEDMARQIATAVGPCGNNRDYIFMLEKALFNIGHEEEMVIELANEVRKVLDLLENGISRDNKLLGAAPHIVLKSHIPSLELQPLPEAIATDS 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2482557 2485586 - MELO3C003603.2.1 Cme04g00317 324578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00317 224 CDD GGCT_like 5 110 IPR013024 -
Cme04g00317 224 Gene3D - 2 180 - -
Cme04g00317 224 SUPERFAMILY Gamma-glutamyl cyclotransferase-like 2 108 IPR036568 -
Cme04g00317 224 Pfam ChaC-like protein 4 180 IPR006840 GO:0003839|GO:0006751
Cme04g00317 224 PANTHER CATION TRANSPORT PROTEIN CHAC-RELATED 1 224 IPR006840 GO:0003839|GO:0006751
Cme04g00317 224 PANTHER GAMMA-GLUTAMYLCYCLOTRANSFERASE 2-2 1 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00317 K22596 GGCT; gamma-glutamylcyclotransferase, plant [EC:4.3.2.9] - csv:101209842 454.521
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01710 Cme04g00317 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00573 Cme-Chr3:8909889 Cme04g00317 Cme-Chr4:2482557 1.82E-65 transposed
Cme03g01710 Cme-Chr3:25726925 Cme04g00317 Cme-Chr4:2482557 3.20E-119 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g241 . . . . . . . . . . Cma01g01587 . . Car12g00258 Sed03g1518 Cpe07g00236 . Bhi04g01114 Tan02g2598 . . . . Lcy13g1366 . . . . . . . . . . Cone20ag0622 . . . Cme03g01710 . . . . . . . . . Cmo01g01635 . Cma09g00541 . . . . Cpe02g00391 . . . . . . . Cla08g01252 . . . . . Cre08g1191 Lsi08g01114 Csa02g02305 . Cme04g00317
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002891 1 3 1 2 0 1 4 1 1 2 2 1 2 2 2 2 1 3 3 2 2 2 1 1 2 0 2 3 4 1 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00317 Cme_Chr04 FPKM 9.395468 9.868433 7.985035 8.39075 7.210821 7.305107 7.452912 9.487032 8.406178 9.514474