Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00318 ATGGGGGTTTGTGATTTCTTCATTTCCACCGCGAAGCCGAAGATTGGGCATCGAATGCGAACGGGCAGTGCAGAAAAGCTATGGCTTCCACTTCCTATGAATTTGAGGGTTGAAGGATTTCGGAACTCGAAACGACGAACATTTGAGTGTGAAATGAAGAAGGAAAACGCTGGTAACCGTGGATCGGGGGTTTCAGGTTCTCGTCGGACGCGTTCTCAGATAGCAGTAGCGCCGGGTTGGACGGCGGCGGATTGTCTTGTTCTTGTTAATGTGATTGCGGCTGTGGAGGCTGATTGTTTGAAAGCTTTGTCTAGCTATCAGAAATGGAAGATTGTTGCAGAGAACTGCACGTCTTTGGATGTGGTTCGGACTTCGAATCAGTGCAGGAGAAAGTGGGATTGTCTGTTGATTGAACATGATGTTATCAAGCAATGGGAGTTAAAGATGCCGGATGATGATTCTTATTGGCGTTTGGCGAGTGGAAGGAGAAAAGAATTGGGACTTCCTGAAAATTTTGATGAGGAGCTGTTCAAAGCAATTGATAATGTCGCATCAATGAGGGCAAATCAGTCGGATACGGAGCCCGATAGTGATCCGGAGGCTGCTATTGAGAACGCTAATGAAATTGCAGAGCCGGGGCCTAAAAGGCAAAGACGTCGTTCAATGTCTAAAAGCAATCAAGCTCTTGAGAATTCTCCGGAATGTGAGAGAAATCAGGCACTTGAGATATCTTTAGAATGTAAAGAAGTAGAAGATGGAGGCGAAGGAGAAGGAGAAGAAGTAAAAGAAAAACCTCTATTAAGCTCTCCAGAACTAGAGTCTCAAGAATACTACATCAAAAGCAACGAATCAAAGGTGGCTGATGATGTCGAACCCAAAGAGCAAATGATGGCAAAGTTTTTGCTTGAAAATGCTGAAAAAGTTCAAGCAATTGTGTCTGAGAATGCAGAATATACAACTTCTGATGAAAAGTGTAACAAGGACCAAACTAATTTGGTAAGGCATCAAGGGAGCAAGCTTATCAGATGCCTTGGAGATATTCTCAACACTATTAACGATCTCCGTGGCCTGCTCAAAGATTGTGACTGA 1089 43.99 MGVCDFFISTAKPKIGHRMRTGSAEKLWLPLPMNLRVEGFRNSKRRTFECEMKKENAGNRGSGVSGSRRTRSQIAVAPGWTAADCLVLVNVIAAVEADCLKALSSYQKWKIVAENCTSLDVVRTSNQCRRKWDCLLIEHDVIKQWELKMPDDDSYWRLASGRRKELGLPENFDEELFKAIDNVASMRANQSDTEPDSDPEAAIENANEIAEPGPKRQRRRSMSKSNQALENSPECERNQALEISLECKEVEDGGEGEGEEVKEKPLLSSPELESQEYYIKSNESKVADDVEPKEQMMAKFLLENAEKVQAIVSENAEYTTSDEKCNKDQTNLVRHQGSKLIRCLGDILNTINDLRGLLKDCD 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2493520 2496187 + MELO3C003604.2.1 Cme04g00318 324579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00318 362 MobiDBLite consensus disorder prediction 205 237 - -
Cme04g00318 362 PANTHER OS02G0174300 PROTEIN 52 361 - -
Cme04g00318 362 ProSiteProfiles Myb-like domain profile. 80 136 IPR001005 -
Cme04g00318 362 MobiDBLite consensus disorder prediction 249 271 - -
Cme04g00318 362 Pfam Myb/SANT-like DNA-binding domain 80 151 IPR044822 -
Cme04g00318 362 PANTHER OSJNBA0043A12.37 PROTEIN-RELATED 52 361 - -
Cme04g00318 362 MobiDBLite consensus disorder prediction 249 269 - -
Cme04g00318 362 Gene3D - 80 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00318 - - - csv:101210084 547.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00318 Cme-Chr4:2493520 Cme11g02367 Cme-Chr11:30650125 7.77E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g242 . . . . . . . . . . Cma01g01586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01634 . Cma09g00540 . . . . Cpe02g00392 . . . . . . . . . . . . . . . . . Cme04g00318
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003929 0 2 0 0 0 1 2 1 2 1 1 1 2 2 2 2 1 1 3 1 2 2 1 2 2 2 2 2 4 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00318 Cme_Chr04 FPKM 12.735152 12.391589 6.316499 6.384504 21.662727 23.209679 23.372763 3.127169 3.458536 3.261451