Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00319 ATGGCTCGTAAAGTAGACCTGCTTTTACTGATCTTATTTCTAGTCTGGTGCTGTAACACTTCCTCTAGTACTAGTCCCGAGGCCGAAATTCTCATCAAGTTCAAGAGCTCTCTTTCACACAACCCCGCCTTGGACAACTGGAACGTGTCCATCAACATCTGCGACGATGATCCAAAAACTACAGGTTTCTGGACTGGCGTGACTTGTAAAGATGGAACTCTGTTTGGGTTACGGCTAGAGAACATGAGCTTAAGCGGGTTTATCAACATAAGCGTGCTCGTGAACTTGCCATCTCTAAGAAGCTTAAGCTTCATGAACAATAGCTTTCATGGTTCGATGCCTCCCGTTAGGGAACTGGGAGCACTAAGGGCTTTATATCTTGCATACAACAAATTCTCTGGTACAATATCTGATGATGCTTTTCAAGATATGAGGTCTTTGAAAACGTTGCGTTTAGAAGAGAATGAGTTTAGAGGAGGAATTCCAAGTTCCCTTTCTAGTTTGCCAGCATTAGTGGAATTAAGCCTTGAAGGGAATAGATTTGAAGGCAACATCCCTGATTTTATACCAAGGGATTGGAAGTTGTTTGATTTGTCCAATAACAAATTGGAGGGTTCAATACCTCCTGGCTTAGCCAATATCGACCCCATTGCATTTGCAGGGAATAACGATTTATGTGGAAGACCTCTTAGCCGATGCAAGTCTCCAAAGAAATGGTACATCCTCATCGGAGTCACCGTCGGAATCGTCTTCTTAGCGATCGCTGTCATTTCCCATCGTTACCGCCGCCGCAAGGCCTTATTATTAGCGGCGGAAGAAGCCCACAATAAAGTGGGCATGGCAAAGGCCCAAAGTCAAGAACAGACAGAAGAAAACGCGAAGCTCCAATTCGTTCGGGCCGACAGGCCCATATTTGACTTAGAGGAGCTGTTGACGGCCCCAGCAGAAGTATTGGGCGGTGGAAGTTTTGGGTCGTCTTATAAGGCCCTGCTTTCAAATGGGCCTCCAGTGGTTGTGAAAAGGCTTCGCCCCATGAGATGCGTTGGGTTCGAGGAGTTCCATGAGCATATGAAAAAACTTGGCTCAATTTCACATCCTAATTTGCTTCCTCCTCTGGCTTTCTATTATAGAAATGAAGATAAGCTTCTGATTTCGGAGTTCATAGGGAATGGGAACTTAGCTGATCATCTTCATGGCCACGCTCAGCGTACGCCTGGAAATATTGGGCTGGACTGGCCCACACGGTTACGGATCATCAAAGGAGTGGGCCGAGGGCTGGTCCATTTACATAGAGCATTACCGAGCCTGAGCCTACCACACGGCCACTTAAAATCCTCCAACATCCTTCTTAACAGCAACTACGAGCCTCTATTAACCGACTTCGGCCTCGATCCTCTAGTTTGCCAGGATCAAGGCCATCAATTCATGGCGGCGTACAAGTCGCCGGAGTACATCCGGCACCGCCGAATCTCCAGAAAGACCGACGTGTGGAGCCTCGGAATTCTGATCTTGGAGCTTCTGACAGGGAAGTTTCCGGCGAACTATCTGAGGCAGGGAGGGGGTTCGGGGAACGGAGATCTGGCAGCGTGGGTGAGGTCGGCGGTCAGGGAGGAGTGGACGGCGGAGGTATTCGATGGGGATATGATGAAGGGGACGAAGAACGAAGACGGGGAAATGGTGCGGTTGTTAAGGATCGGAATGAATTGCAGTGAAGAGGAGGAAGATCAACGGTGGGGATTGAAGGAGGCGGTGGAGAAGATTGAGGAATTGAAGGAGACGGAAAATTCTACTGAGGATGAATTTTATTCGTCTTATGGAAGTGAAGTTGAAGTTAAATCTGTAGGGAGAGAATAG 1854 47.84 MARKVDLLLLILFLVWCCNTSSSTSPEAEILIKFKSSLSHNPALDNWNVSINICDDDPKTTGFWTGVTCKDGTLFGLRLENMSLSGFINISVLVNLPSLRSLSFMNNSFHGSMPPVRELGALRALYLAYNKFSGTISDDAFQDMRSLKTLRLEENEFRGGIPSSLSSLPALVELSLEGNRFEGNIPDFIPRDWKLFDLSNNKLEGSIPPGLANIDPIAFAGNNDLCGRPLSRCKSPKKWYILIGVTVGIVFLAIAVISHRYRRRKALLLAAEEAHNKVGMAKAQSQEQTEENAKLQFVRADRPIFDLEELLTAPAEVLGGGSFGSSYKALLSNGPPVVVKRLRPMRCVGFEEFHEHMKKLGSISHPNLLPPLAFYYRNEDKLLISEFIGNGNLADHLHGHAQRTPGNIGLDWPTRLRIIKGVGRGLVHLHRALPSLSLPHGHLKSSNILLNSNYEPLLTDFGLDPLVCQDQGHQFMAAYKSPEYIRHRRISRKTDVWSLGILILELLTGKFPANYLRQGGGSGNGDLAAWVRSAVREEWTAEVFDGDMMKGTKNEDGEMVRLLRIGMNCSEEEEDQRWGLKEAVEKIEELKETENSTEDEFYSSYGSEVEVKSVGRE 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2496731 2500638 + MELO3C003605.2.1 Cme04g00319 324580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00319 617 Coils Coil 580 600 - -
Cme04g00319 617 SUPERFAMILY Protein kinase-like (PK-like) 316 592 IPR011009 -
Cme04g00319 617 Pfam Protein tyrosine and serine/threonine kinase 316 586 IPR001245 GO:0004672|GO:0006468
Cme04g00319 617 MobiDBLite consensus disorder prediction 590 617 - -
Cme04g00319 617 ProSiteProfiles Protein kinase domain profile. 312 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00319 617 SUPERFAMILY L domain-like 27 218 - -
Cme04g00319 617 Pfam Leucine rich repeat N-terminal domain 26 69 IPR013210 -
Cme04g00319 617 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 7 599 - -
Cme04g00319 617 PANTHER LRR RECEPTOR-LIKE KINASE 7 599 - -
Cme04g00319 617 Gene3D Phosphorylase Kinase; domain 1 276 387 - -
Cme04g00319 617 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Cme04g00319 617 Gene3D Transferase(Phosphotransferase) domain 1 388 612 - -
Cme04g00319 617 Gene3D Ribonuclease Inhibitor 24 219 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00319 - - - csv:101210337 1169.45
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01708 Cme04g00319 CCT
Cme03g01708 Cme04g00319 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00319 Cme-Chr4:2496731 Cme05g01954 Cme-Chr5:28090976 2.38E-110 dispersed
Cme02g01648 Cme-Chr2:23696033 Cme04g00319 Cme-Chr4:2496731 0 transposed
Cme05g02085 Cme-Chr5:29058644 Cme04g00319 Cme-Chr4:2496731 6.96E-141 transposed
Cme07g00938 Cme-Chr7:9844632 Cme04g00319 Cme-Chr4:2496731 0 transposed
Cme03g01708 Cme-Chr3:25715727 Cme04g00319 Cme-Chr4:2496731 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g244 . . . . . . . . . . . . . . . . . Bhi04g01111 . . . . . Lcy13g1363 . . . . . . . . . . Cone20ag0623 . . . Cme03g01708 . . . . Bpe14g00541 . . . . . . . . . . . . . . . . . . . Cla08g01254 . . . . . . Lsi08g01116 Csa02g02307 . Cme04g00319
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003929 0 2 0 0 0 1 2 1 2 1 1 1 2 2 2 2 1 1 3 1 2 2 1 2 2 2 2 2 4 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64785 PF07714 PK_Tyr_Ser-Thr 1.40E-25 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00319 Cme_Chr04 FPKM 0.632123 0.767663 3.357668 3.635384 2.80739 2.141115 2.808718 0.941382 0.759359 0.715116