Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00321 CCTAATGGAGTGGCGCGAGGTTGGCTGCTGTACTTACCCCAAAACCCCTCATTGCAAAACCCTCTTTCTTTACCTCCTCTGTTCTTTCTCTCTCAAACTCTGTTCATCCCTTTCTCTCTACTTGAACGCGAGAAGCTTGCCGAGAGAAGCTTCGAAGAGCCGAAGTCAATGAGCCAGCTTCAGAGGAGCCTCTCATTGGCTTCTTCTTCCAGTAACGCCATTTCTTCCTCTGTATTTTCAACAGCTCTCTCTGCTTTTTCCTCCTCCCGACTCCGTCATTTCTCGACCAAGTTGCAGGGCAGCACTCTTCAAAATTATACTAGCAAATGCATACCGGTTTTACCATTTCCCACTGCTTGTAGTTCAGCCAGATGTTCTCAGCTTATTTTTAGAAAAGGTGGAGTAACATTTGCTGTCAAGACTGAACGTGCAAAGGCTGGGCAGTATCGTGCATGCGATGGGCCAAGTGTTTTCACTCTATATTCCCGCTTACCGTTGAGATTTCCTCATTCTGCTGCATCACCAAATGCTTCTAACCAACAGTTGTTAAATTGCACTTTTACACATAAACTTCCTAATTATAGAGCGTTTGGACGGAAGTTCTTTTCTAACACTACAGAAGCATCGAGTGGAACTAAGAATAAGAATGTTAAATATTTAAGGAATGGAACAAGTACAATTGAAGGATTGAATAAAAAATCAAAGGGTGCAAAGCCTGTTGCTACATCCAGGAAAAAAACAAGAATTAGTGCTTCAGCGCCATCTGGCTCCACCCATGTTGATGGAACAAATTCAAGCGATCAGTTGGTTGGAGCTACAAAGGAGGCAAATCTAGTTTCATCTAATTCTTCTTCATCCATTAGGAGAGCATCCAAGGGTTTGAATGAAAAGAAGTCTTGGAGCAAGAAAAAGAAGAAAGCTATTTCTTCAACCAATGATGCAGATGTTGAAGCCGTATGCAAGGATAGTCAGTCAAAGAGCTTTGGTAGTAGCAATACTGACCAGGATGTTGTACAAGATCCCAAGAAGGAAGCCATTTCTTCAACCATTAGGAAAGCATCCAAGGGTTTGAATGAAAAGAAGTCTTGGAGCAAGAACAAGAAGGAAGCTATTTCTTCAACCAATGATGCAGATGTTGAAGCCGTATGCAAGGATGGTCAGTCAAAGAGCTTTGGTAGTAGCAATACTGACCAGGATGTTGTACAAGATCCAAAGAAAAATGTAACCAAGGGTACTTCGAAAGATTCTGGTTCAACCAAACAACAATCCAATAAGAAAAAATGCAACTCCAGCAGAAATAAAGAAGCTACAAAAGGTGCTAATAAGTTGCAACAGAAGCCAAACGTCATAGTGGATACAAGGGGGACATCTCAGGGAAAGACCACTTTCAAGCAGCTATATCCCCCAATGGGAAAATCTGTTCTGGTGGTGGAATCTGTTACAAAGGCAAAAGTTATTCAGGATTATCTTGGTGATATGTTTGTGGTGCTACCTAGCCATGGCCATGTTAGAGACTTGGCTGCAAGGTCTGGATCTGTAAGACCTGAGGATGACTTCATTATGGTGTGGGAGGTTCCTTCTGCTGCCTGGACTCATCTTAAAAGCATCGAACTTTCCTTAAATGGAGCAGAGAACCTTATTCTTGCATCTGATCCAGATCAGGAAGGTGAAGCTATTGCTTGGCATATAATTGAGATGTTGCAGCACCAGCATGCTCTACATGAAGGTATTAGCATAGCAAGGGTTGTTTTTCATGAAATAACTGAGGCTTCTATAAAGAGTGCCCTGCAATCTCCAAGAGTAATTGATGAAAACTTGGTACAGGCTTACCTTGCACGGCGTGCTTTAGATTATTTGATTGGATTTAATATTTCACCATTATTATGGAAGAAATTACCAGGTTGCCGATCACCTGGGCGTGTTCAATCAGCTGCACTTGCCCTAATATGTGACAGAGAAACAGAAATTGATAAATTTCAGGCACAAGAATATTGGACTATTGACGTTAAGTTGAACCAAAAAGATCCTTGTTCTTCCGTGGAAGATTTTGCAGTCCCTGCACATTTGACCCATTTTGATTCTAAGAAGTTAAATCAGTTTCCAATCAGCTCCAACATGGAGGCAAAGAACATAGAAACTGCGCTGAAATCAGTAAATTTTCAAGTGCTTAGCTCTAGAAAGAATATTGTGCAGACAAACCCTCCAATGCCATATATAACATCTACACTTCAGCAAGATGCAGCAAAAAAATTTAATTTCCCTGCAACTTACACAATGAAGCTTGCCCAGAAACTTTATGAGGGAATTCAATTGGCTGATGGAAAGGCAGCTGGTTTAATAACTTATCCAAGAACGGATGGGCTACATATCTCTGATGAAGCTGTTAAGGACATTCACTCCCTGATTATGCAAAGATTTGGGCAGGATTTTGTTTCCAAAAGTGGACACAAATATTTTAAGAAGGTGAAGAATGCTCAAGAGGCTGACGAAGCAATCAGACCCACTGATGTGCAACGGTTACCCTCAATGCTAGTGGGAACACTTGATGAGGATTCTCACAAACTATACTCTCTTATTTGGCTCAGAACGATGGCATGTCAAATGGAACCTTCTATCACTGAAGAGATTAAAATTGACTGTGGACTTGCGGATGAATCCATCATTGCCAGATCTACATGCTCAAGAGTTCAATTTCGTGGGTTTCGAGTTGTTTTTGAGGATCCAGAAGTTCATGCAGTCAAACATAAAGACCATGAAGAAAGCGGACGGGATGAACTGTTCAGAATTCTGAATCCATTGAAGCCAGGGGATCGATTGTCTCTACTTGCTGTTGAACTAGAGGAACATTTTACCCAGCCCCCACCCCGCTATACTGAGGGAACATTGGTCAAAAGGATGGAGGAGCTAGGGATTGGAAGACCTTCCACATATGCAACCGCGCTAAAAGTTTTAGAGGACAGGAACTATGTGGCAGTGAAAAGTCATCTTCTACATCCGGAGTTTCGTGGGCGCATAGTATCGGCATTTCTTTGTCATCATTTCTCTGGCATCACCGATTATAGTTCTACTGCAGACTTGGAAAATAAGCTTGATAATGTCTCAGCTGGTTTAACTGAATGGAAACGCCTCCTAAGAGATTGTTGGAACCAGATCAGCTCATCTTGTAAACGGGCTAATAATGTTAATATTTATCAGGTGGAAAAGATGTTGGAGAAGAAATATGGGGACTTCTTATTTTCTTTTCTTCCTAATAATTCCAGAGCATGTCCAAGTTGTCCGGATGGCACTCTGAGCTTCAAAGTTAGTGGGTGTGGTATTGGCTATTACATAGGTTGTGATCGACAGCCAACATGCAAGTATGTTGCAAAAACATTTTTTGGTGAGGATGAAGATAAAGATCCTTTTCAATATGACGGCATTGATTTTCTTAATTATAAGAATGTTCCCTTTCAGATTCTTTTGAAGAATGGTCCATTTGGGTTTTATGTACAACTTGGTGAGGACAGGAAAGGGTACGTGCCCAAAAGAGCCTCTCTTTCTGAGATAAAGGACAAGAATTCTATTACTCTCGATGTTGCTATTGATCGTTTACGCTACCCAATTACCTTGGGAAAACATCCAAAGGATGGCCAACCCGTGATAGTAAAGATCGCAAGAGTTGGATTCACGGTTAGACATGGACGCACGATAGCTTCCGTTCCTAAGAGCGTGAAGCCAGGTAGCCTCACTTTAGCGAAAGCGCTGAAGCTTCTGTCAAGTAGCAAAGTTAGAAGGATTGGGCGACCTAAAGGCCCGAACAAGGTTGATGATGAATTCTATTGA 3822 41.71 PNGVARGWLLYLPQNPSLQNPLSLPPLFFLSQTLFIPFSLLEREKLAERSFEEPKSMSQLQRSLSLASSSSNAISSSVFSTALSAFSSSRLRHFSTKLQGSTLQNYTSKCIPVLPFPTACSSARCSQLIFRKGGVTFAVKTERAKAGQYRACDGPSVFTLYSRLPLRFPHSAASPNASNQQLLNCTFTHKLPNYRAFGRKFFSNTTEASSGTKNKNVKYLRNGTSTIEGLNKKSKGAKPVATSRKKTRISASAPSGSTHVDGTNSSDQLVGATKEANLVSSNSSSSIRRASKGLNEKKSWSKKKKKAISSTNDADVEAVCKDSQSKSFGSSNTDQDVVQDPKKEAISSTIRKASKGLNEKKSWSKNKKEAISSTNDADVEAVCKDGQSKSFGSSNTDQDVVQDPKKNVTKGTSKDSGSTKQQSNKKKCNSSRNKEATKGANKLQQKPNVIVDTRGTSQGKTTFKQLYPPMGKSVLVVESVTKAKVIQDYLGDMFVVLPSHGHVRDLAARSGSVRPEDDFIMVWEVPSAAWTHLKSIELSLNGAENLILASDPDQEGEAIAWHIIEMLQHQHALHEGISIARVVFHEITEASIKSALQSPRVIDENLVQAYLARRALDYLIGFNISPLLWKKLPGCRSPGRVQSAALALICDRETEIDKFQAQEYWTIDVKLNQKDPCSSVEDFAVPAHLTHFDSKKLNQFPISSNMEAKNIETALKSVNFQVLSSRKNIVQTNPPMPYITSTLQQDAAKKFNFPATYTMKLAQKLYEGIQLADGKAAGLITYPRTDGLHISDEAVKDIHSLIMQRFGQDFVSKSGHKYFKKVKNAQEADEAIRPTDVQRLPSMLVGTLDEDSHKLYSLIWLRTMACQMEPSITEEIKIDCGLADESIIARSTCSRVQFRGFRVVFEDPEVHAVKHKDHEESGRDELFRILNPLKPGDRLSLLAVELEEHFTQPPPRYTEGTLVKRMEELGIGRPSTYATALKVLEDRNYVAVKSHLLHPEFRGRIVSAFLCHHFSGITDYSSTADLENKLDNVSAGLTEWKRLLRDCWNQISSSCKRANNVNIYQVEKMLEKKYGDFLFSFLPNNSRACPSCPDGTLSFKVSGCGIGYYIGCDRQPTCKYVAKTFFGEDEDKDPFQYDGIDFLNYKNVPFQILLKNGPFGFYVQLGEDRKGYVPKRASLSEIKDKNSITLDVAIDRLRYPITLGKHPKDGQPVIVKIARVGFTVRHGRTIASVPKSVKPGSLTLAKALKLLSSSKVRRIGRPKGPNKVDDEFY 1273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2530797 2551424 - MELO3C003609.2.1 Cme04g00321 324582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00321 1273 Gene3D Topoisomerase I, domain 3 658 954 IPR013825 -
Cme04g00321 1273 PRINTS Prokaryotic DNA topoisomerase I signature 546 559 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 PRINTS Prokaryotic DNA topoisomerase I signature 855 871 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 PRINTS Prokaryotic DNA topoisomerase I signature 970 984 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 PRINTS Prokaryotic DNA topoisomerase I signature 636 654 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 PRINTS Prokaryotic DNA topoisomerase I signature 777 786 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 MobiDBLite consensus disorder prediction 387 426 - -
Cme04g00321 1273 Gene3D Topoisomerase I, domain 4 734 870 IPR013826 -
Cme04g00321 1273 SMART toprim5 472 572 IPR006171 -
Cme04g00321 1273 ProSiteProfiles Toprim domain profile. 472 587 IPR006171 -
Cme04g00321 1273 MobiDBLite consensus disorder prediction 245 290 - -
Cme04g00321 1273 SUPERFAMILY Prokaryotic type I DNA topoisomerase 472 1096 IPR023405 -
Cme04g00321 1273 SMART topIban2 578 666 IPR003601 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 Pfam Toprim domain 474 587 IPR006171 -
Cme04g00321 1273 Gene3D - 469 608 - -
Cme04g00321 1273 TIGRFAM topA_bact: DNA topoisomerase I 475 1122 IPR005733 GO:0003677|GO:0003917|GO:0006265
Cme04g00321 1273 Hamap DNA topoisomerase 1 [topA]. 472 1227 IPR028612 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 CDD TOP1Ac 604 1053 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 Pfam DNA topoisomerase 602 1044 IPR013497 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 763 786 IPR023406 GO:0003917
Cme04g00321 1273 Gene3D Topoisomerase I, domain 2 612 1047 IPR013824 -
Cme04g00321 1273 PANTHER BNAA01G05990D PROTEIN 240 1270 - -
Cme04g00321 1273 SMART topIaneu2 726 1007 IPR003602 GO:0003677|GO:0003916|GO:0006265
Cme04g00321 1273 MobiDBLite consensus disorder prediction 337 374 - -
Cme04g00321 1273 Pfam Topoisomerase C-terminal repeat 1206 1255 IPR025589 -
Cme04g00321 1273 Pfam Topoisomerase C-terminal repeat 1152 1202 IPR025589 -
Cme04g00321 1273 PANTHER DNA TOPOISOMERASE, TYPE IA, CORE 240 1270 IPR000380 GO:0003677|GO:0003917|GO:0006265
Cme04g00321 1273 MobiDBLite consensus disorder prediction 228 446 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00321 - - - cmo:103503742 2311.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00321 Cme-Chr4:2530797 Cme04g02182 Cme-Chr4:29056176 3.76E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g248 . . . . . Bpe02g00226 . . . . Cma01g01584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo01g01631 . Cma09g00537 . . . . . . . . . . . . . . . . . . . . . . Cme04g00321
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006908 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00321 Cme_Chr04 FPKM 0.858942 1.701063 32.275246 29.970146 17.166092 14.674317 15.649386 230.713058 236.141785 220.408371