Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00326 ATGGCACCGAGATTGGGGTTTTTGTGTCGGTGGGGTAAAGAGAAAGACCCTCAAAAGGGAACTCCGGTGGTTGTAACAATGGAGAAACCTAACTTCTCCGTCGTAGAGATCGACGGTCCCGACGCTGCATTCCGGCCGGTGGAGAAGAGTAGAGGCAAGAATGCCAAACAGGTTACATGGGTTCTTCTTCTAAAGGCCAATCGAGCCGTCGGTTGCATAACTTGGCTTCTTACTGTTCTTTGGGCATTGTTGGGAACAATCAAGAAGAGGCTGATCTACAGACAAGGAGTCGCCATTGAAGGCGGGAAGTTGGGAAGAGGGAAGTTATTGTTTGGAGTTATTAGAGTTTTCTTAGTAACTTCTATTGCCATTCTTGTTTTTGAAATACTTGCTTATTTCAAAGGCTGGCATTATTTTCAGAATTCCAATCTCCATATTCCTCAAGCTTCTGAGTTGCAAGGATTCCTTCATTCACTCTATGTAGCTTGGTTAACTTTTAGAGCAGACTACATTGCTCCCCTCATTCAAGCACTCTCTAAATTTTGCATTGTTTTGTTCCTTATTCAATCAGTGGATCGTATGATCCTTTGTTTCGGTTGCCTGTGGATTAAGTACAAAAGAATTGAACCCAAGATTGAAGGGGATCCCTTCAAGTTGGATGATGTGGAGGGAGCTGGGTACAAGTATCCAATGGTTCTTGTTCAAATTCCCATGTGCAACGAGCGGGAGGTTTATGAGCAATCTATCTCTGCAGTCTGTCAGATTGATTGGCCAAGGGACCATTTACTAATTCAAGTTCTTGATGATTCTGATGATGAGAGCATCCAACTGTTAATTAAAGCAGAGGTTGCTAAATGGAGCCAAAAGGGGGTAAATATAGTGTATCGCCATCGATTAGTAAGAACAGGATATAAAGCAGGGAATCTCAAGTCTGCAATGAGTTGCGATTATGTTAGAGATTATGAGTTTGTAGCAATTTTTGATGCTGACTTTCAACCTAATCCAGATTTTCTTAAACTGACCGTCCCCCATTTCAAGGATAACCCAGAGCTTGGGTTGGTTCAGGCCAGATGGTCTTTCGTGAACACGGACGAAAACTTGTTGACACGCCTTCAAAATATTAACTTGTGTTTCCACTTTGAGGTAGAACAGCAGGTTAATGGGGTGTTCCTTAATTTCTTCGGTTTTAATGGCACTGCTGGTGTTTGGAGGATTAAAGCCTTGGAGGAATCTGGAGGATGGCTTGAAAGAACCACAGTAGAGGATATGGACATAGCTGTGAGAGCCCATCTTAACGGCTGGAAATTTGTATTTCTAAACGACGTTAAGGTCCTTTGTGAAGTTCCTGAGTCCTATGAAGCTTATAGGAAGCAGCAACATCGTTGGCATTCTGGTCCTATGCAACTCTTCAGATTGTGTCTTCCAGCAGTCATAAGTTCTAAGATATCAACATGGAAGAAGGCAAATTTGATACTATTGTTCTTTCTATTAAGGAAGCTTATCCTTCCATTCTATTCCTTCACTTTGTTCTGCATAATTCTTCCCCTAACCATGTTCGTACCAGAAGCCGAGCTTCCTGTATGGGTGATCTGTTATGTCCCCGTTTTCATGTCATTACTCAACATTCTTCCATCCCCAAAATCTTTTCCTTTTATTGTCCCCTACCTTCTTTTTGAGAACACCATGTCCGTCACCAAATTCAATGCCATGGTATCTGGTTTATTCCAGTTAGGTAGCTCTTATGAGTGGATTGTGACTAAAAAAGCTGGCAGGTCCTCCGAATCCGACTTACTAGCTGCTGCTGAAAGGGACTCTAAGACAATGAATCAAGCTCTGATCTATAGAGGTGCTTCCGAGAGTGAGATTTCCGAGTTGGCTCACTTGAAGGAACACAAAGAAGTAGTCTCTGCACCTGTCAAAAAAGTTAACAAGATATATCGGAAAGAGCTAGCTCTCGCGTTTCTTTTACTGTTAGCCTCACTCAGGAGTCTCTTGGCTGCACAAGGAGTCCACTTCTACTTCTTGATGTTCCAAGGTGTAACCTTCCTCCTTGTAGGCCTTGATCTAATTGGAGAGCAAATGAGCTGA 2088 42.67 MAPRLGFLCRWGKEKDPQKGTPVVVTMEKPNFSVVEIDGPDAAFRPVEKSRGKNAKQVTWVLLLKANRAVGCITWLLTVLWALLGTIKKRLIYRQGVAIEGGKLGRGKLLFGVIRVFLVTSIAILVFEILAYFKGWHYFQNSNLHIPQASELQGFLHSLYVAWLTFRADYIAPLIQALSKFCIVLFLIQSVDRMILCFGCLWIKYKRIEPKIEGDPFKLDDVEGAGYKYPMVLVQIPMCNEREVYEQSISAVCQIDWPRDHLLIQVLDDSDDESIQLLIKAEVAKWSQKGVNIVYRHRLVRTGYKAGNLKSAMSCDYVRDYEFVAIFDADFQPNPDFLKLTVPHFKDNPELGLVQARWSFVNTDENLLTRLQNINLCFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLNGWKFVFLNDVKVLCEVPESYEAYRKQQHRWHSGPMQLFRLCLPAVISSKISTWKKANLILLFFLLRKLILPFYSFTLFCIILPLTMFVPEAELPVWVICYVPVFMSLLNILPSPKSFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKAGRSSESDLLAAAERDSKTMNQALIYRGASESEISELAHLKEHKEVVSAPVKKVNKIYRKELALAFLLLLASLRSLLAAQGVHFYFLMFQGVTFLLVGLDLIGEQMS 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2611900 2615264 + MELO3C003616.2.1 Cme04g00326 324587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00326 695 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 449 IPR029044 -
Cme04g00326 695 SUPERFAMILY Nucleotide-diphospho-sugar transferases 232 531 IPR029044 -
Cme04g00326 695 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 5-RELATED 13 695 - -
Cme04g00326 695 Pfam Glycosyl transferase family group 2 324 530 IPR001173 -
Cme04g00326 695 PANTHER - 13 695 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00326 - - - csv:101217415 1352.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01858 Cme-Chr1:26514541 Cme04g00326 Cme-Chr4:2611900 0 dispersed
Cme03g02127 Cme-Chr3:28494790 Cme04g00326 Cme-Chr4:2611900 0 dispersed
Cme04g00326 Cme-Chr4:2611900 Cme09g00337 Cme-Chr9:2882557 0 dispersed
Cme04g00326 Cme-Chr4:2611900 Cme07g00257 Cme-Chr7:1672646 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g00493 . 221 382 REM Transcription Factor Family AT1G49480 71.0 1.9e-56 216.1
Cme04g00326 . 1 695 REM Transcription Factor Family AT2G24630 77.5 0.0e+00 1089.3
Cme09g00337 . 54 716 REM Transcription Factor Family AT2G24630 69.3 2.6e-266 914.8
Cme03g02127 . 5 700 REM Transcription Factor Family AT2G24630 66.1 1.7e-257 885.6
Cme07g00257 . 1 686 REM Transcription Factor Family AT2G24630 63.0 1.5e-253 872.5
Cme01g01858 . 5 703 REM Transcription Factor Family AT2G24630 61.3 2.8e-244 841.6
Cme04g00326 . 1 695 REM Transcription Factor Family AT2G24630 77.5 0.0e+00 1089.3
Cme09g00337 . 54 716 REM Transcription Factor Family AT2G24630 69.3 2.6e-266 914.8
Cme03g02127 . 5 700 REM Transcription Factor Family AT2G24630 66.1 1.7e-257 885.6
Cme07g00257 . 1 686 REM Transcription Factor Family AT2G24630 63.0 1.5e-253 872.5
Cme01g01858 . 5 703 REM Transcription Factor Family AT2G24630 61.3 2.8e-244 841.6
Cme04g00326 . 1 695 REM Transcription Factor Family AT2G24630 77.5 0.0e+00 1089.3
Cme09g00337 . 54 716 REM Transcription Factor Family AT2G24630 69.3 2.6e-266 914.8
Cme03g02127 . 5 700 REM Transcription Factor Family AT2G24630 66.1 1.7e-257 885.6
Cme07g00257 . 1 686 REM Transcription Factor Family AT2G24630 63.0 1.5e-253 872.5
Cme01g01858 . 5 703 REM Transcription Factor Family AT2G24630 61.3 2.8e-244 841.6
Cme11g00493 . 221 382 REM Transcription Factor Family AT1G49480 71.0 1.9e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006307 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00326 Cme_Chr04 FPKM 6.178872 5.790191 11.985719 16.831114 35.822987 26.460167 30.536213 12.923415 14.087959 13.903829