Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00327 ATGGGGACGAAATTAGAGAGTGAAAGTAAAGTTGATTCTTCGCAAGAACAGAAGAATAAGAGGATACTTAACCCTGAAAGTGAAAGGATTTTGAGATGGAATAGGGTTTTTTTGTTCTCTTGTTTGACTGCTCTTTTTGTAGATCCCTTGTTCTTCTACCTTCCTTCAGTGATTCATCATAACAGGTCATCTTGTATGACTACTGATTTCAATTTGGGAATTGTTGTGACTGTTTTTCGTACTTTTGCCGATGTCTTTTATCTGTTGCATATGATTTTGAAGTTTCGCATTGCTTATGTATCACCAACTTCAAGAGTTTTTGGCAAAGGTGAACTTGTTACTGATCCTAAGAAGATTGCTGAACGCTATTTGAAGTCTGATTTCTGTATAGATCTCATTGCTTCTCTGCCTCTTCCTCAGATTATGATATGGTTTATCATGCCAGCAATTAGAAGCTCTCATGCAGACCATACAAATAATACTCTTGTATTAATCGTCCTGCTTCAGTATATTCCAAGATTTTACCTGATTTTCCCATTAAGTTCCCACATTATCAAAACTACTGGTGTTGTCACAAAAACTGCTTGGGCTGGAGCTGCATATAACCTTATATTGTATATGCTAGCTAGTCATATCTTAGGAGCAGCATGGTATTTACTATCTGTGGAGCGCCATGCCATGTGCTGGAAGTTCACCTGCAGGAGGGAATTCAGTCCTATGAAATGCCTTCTTGACTATCTGGATTGTGGTACTTTAAATGATGTAGACCGCAGGATATGGGAAGTGAATACTACTGTATTTAGCCAATGTTCTCCAGATGAAGACGTCGTTTTCAATTACGGGATATTTGCGGATGCGATCACTAAAAATGTCATCTCCTCCCGGTTCCTTCAGAAGTACTTCTATTGTTTATGGTGGGGCTTACAGAACTTGAGTTCCTATGGTCAGAGTTTGGAAACAAGCATCTACATAGGAGAGACTTTATTTGCTATCCTCATTGCTATAATGGGTTTGGTCTTGTTTGCGCATTTGATCGGAAATATGCAGACCTATTTGCAATCCATCACTGTGAGACTGGAGGAATGGAGGGTGAAGCGTCGAGACACCGAGGAATGGATGAAACATCGACAACTCCCTCAAGATTTACAAGAACGTGTGAGGAGATTTGTTCAATACAAGTGGCTTGCAACACGAGGAGTGGACGAAGAGTCGATCTTACAAGGCCTTCCAACAGATCTCCGTCGAGATATTCAGCGTCACTTGTGCCTCGACCTTGTTCGACGTGTTCCTTTCTTTGCACAAATGGATGATCAACTACTTGATGCAATTTGCGAGCGACTGGCTTCCTCTCTATGTACACAACGTACTTACATTGTTCGTGAAGGAGATCCTGTTACTGAGATGCTCTTTATCATTCGAGGGATGCTCGAGAGTTCCACTACCGATGGTGGACGATTGGGTTTTTTCAATTCCATAACCTTAAGACCTGGTGATTTTTGCGGTGAAGAGCTTCTCGCTTGGGCATTGCTACCAAAATCATCTATCAGCTTACCATCTTCTACTAGAACTGTTCGAGCAATCACCGAAGTGGAAGCCTTTGCTCTACGTGCAGAGGATCTCAAATTCGTTGCTAACCAGTTTCGACGACTTCATAGCAAGAAGCTTCAGCACACCTTCCGGTTTTACTCTTATCACTGGAGAACTTGGGCAGCATGCTTCATTCAGGCAGCATGGCGTCGCTTCAAAAGAAGAGTCATAGCGAAGTCTCTCAGCTTACAGGAGTCTTTCTCGTTGACTCCCGAGAAGCCAGTGGCCGATGAAGCTGAACAAGGAGAGGAAGGACATAATACTCCGCGCTCAAGTTACTCTCAAGCAAAACAAAACCTTGGTGTCACCATATTGGCTTCAAGGTTTGCTGCAAACACACGTAGAGGAGCACAAAAGCTCAAGGACGTTAACTTATCCAAACTTCGAAAGCCTGATGAGCCTGACTTTTCTGAAGAACCAGATGATTAA 2016 42.31 MGTKLESESKVDSSQEQKNKRILNPESERILRWNRVFLFSCLTALFVDPLFFYLPSVIHHNRSSCMTTDFNLGIVVTVFRTFADVFYLLHMILKFRIAYVSPTSRVFGKGELVTDPKKIAERYLKSDFCIDLIASLPLPQIMIWFIMPAIRSSHADHTNNTLVLIVLLQYIPRFYLIFPLSSHIIKTTGVVTKTAWAGAAYNLILYMLASHILGAAWYLLSVERHAMCWKFTCRREFSPMKCLLDYLDCGTLNDVDRRIWEVNTTVFSQCSPDEDVVFNYGIFADAITKNVISSRFLQKYFYCLWWGLQNLSSYGQSLETSIYIGETLFAILIAIMGLVLFAHLIGNMQTYLQSITVRLEEWRVKRRDTEEWMKHRQLPQDLQERVRRFVQYKWLATRGVDEESILQGLPTDLRRDIQRHLCLDLVRRVPFFAQMDDQLLDAICERLASSLCTQRTYIVREGDPVTEMLFIIRGMLESSTTDGGRLGFFNSITLRPGDFCGEELLAWALLPKSSISLPSSTRTVRAITEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKRRVIAKSLSLQESFSLTPEKPVADEAEQGEEGHNTPRSSYSQAKQNLGVTILASRFAANTRRGAQKLKDVNLSKLRKPDEPDFSEEPDD 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2616233 2621284 - MELO3C003617.2.1 Cme04g00327 324588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00327 671 MobiDBLite consensus disorder prediction 649 671 - -
Cme04g00327 671 MobiDBLite consensus disorder prediction 649 664 - -
Cme04g00327 671 MobiDBLite consensus disorder prediction 1 20 - -
Cme04g00327 671 Pfam Cyclic nucleotide-binding domain 455 542 IPR000595 -
Cme04g00327 671 MobiDBLite consensus disorder prediction 601 625 - -
Cme04g00327 671 ProSiteProfiles cAMP/cGMP binding motif profile. 431 561 IPR000595 -
Cme04g00327 671 Gene3D - 32 357 - -
Cme04g00327 671 SUPERFAMILY Voltage-gated potassium channels 29 353 - -
Cme04g00327 671 Gene3D Jelly Rolls 429 549 IPR014710 -
Cme04g00327 671 CDD CAP_ED 431 562 IPR000595 -
Cme04g00327 671 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 8 668 - -
Cme04g00327 671 SUPERFAMILY cAMP-binding domain-like 361 553 IPR018490 -
Cme04g00327 671 Pfam Ion transport protein 33 358 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme04g00327 671 Gene3D Helix hairpin bin 359 422 - -
Cme04g00327 671 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 668 - -
Cme04g00327 671 SMART cnmp_10 431 562 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01001 Cme-Chr2:14966992 Cme04g00327 Cme-Chr4:2616233 0 dispersed
Cme02g01958 Cme-Chr2:25852405 Cme04g00327 Cme-Chr4:2616233 0 dispersed
Cme04g00327 Cme-Chr4:2616233 Cme11g01806 Cme-Chr11:26249176 0 dispersed
Cme12g02040 Cme-Chr12:25864194 Cme04g00327 Cme-Chr4:2616233 4.43E-145 dispersed
Cme04g00327 Cme-Chr4:2616233 Cme04g01904 Cme-Chr4:26747348 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00327 K05391 - csv:101211072 1306.97