Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00332 ATGGCTGCTTCCGATACTCAATTTGATGTAATAGTCGTCGGTGCCGGCGTAATGGGCAGTTCGACGGCGTACCATCTCGCTAAAACAGGGAACAGAGTTCTGCTTCTCGAGCAATTTGATTTTCTTCATCACAGAGGCTCTTCTCATGGTGAGTCTCGTACCATACGCGCCACCTATCCAGAGGATTATTACCATGACCTCGTTATGGAATCTTACGAGCTCTGGCGGATGGCGGAGGCGGAAATTGGCTTCAAAGTCTACTATCCGGCGGAACAGCTCGATATCGGCCCTTCCAACAGCGAAAGTCTCACTGCCGTCGTTGATACCTGCCTGAAGCATTCGATCCCTCATCTCGTTCTTGATCGTGGGGAACTGATGGAGAAGTATTCCGGCAGGGTGGAGATTCCGGCGAACTGGGTGGCGGTGTGCAGTAAATACGGCGGCGTAATTAAGCCAACGAAGGCGGTTTCGATGTTCCAAACTTTGGCTTACAAAAACGGGACCGTTTTAAAGGATAATGCGGAAGTAGTGGAGATTAAGAGAGATGAGAGTAATGGAAGAATAGTTGTTTCCACAGCCAATGGGGAGAGTTTTCATGGAAAGAAATGTGTTGTGACTGTTGGAGCTTGGAGTAAAAAGTTAGTTAAATCAGTTGGTGGGATTGAATTGCCAATTCTGCCATTGGAGGTTAGTGTTTCCTATTGGAGGATCAAGGAAGGGTTCGAGGCCGAGTACGCGATCGAAGGGGGCTTTCCAACAATGGCTAGTTATGGCGAACCGTATGTTTACGGGACACCATCATTGGAGTTTCCGGGGTTGATTAAGGTAGCCATACATGCTGGATATTCGTGCAACCCGGACAAGCGGTCGTGGGGGAGAGAAGGGCGGCTACCGATAGCTGCGTTAAAGGAGTGGATAGACGAGAAGTTTGGGGGGAGGGTGGATTCAAGTAGACCGGTGTCGTCGCAGTTGTGTATGTACTCGATGACTCCAGATGAGGACTTTGTGATTGATTTCTTGGGAGGGGAATTTGAAAAGGATGTGGTGATTGGTGGTGGGTTTTCGGGGCATGGGTTCAAGATGTCACCGGCGATCGGGAGGATACTAGCAGAGCTTGCATTGAAGGGGGCGGCGGAGGGGGTGGAGCTGAAGTATTTCAAGTTAGCAAGGTTTGAAGAGAATCCAAAAGGTAATGTCAAGAGCTTTGCAGATCAAGTAAAGCTTCACCAGAATGATTAA 1239 49.07 MAASDTQFDVIVVGAGVMGSSTAYHLAKTGNRVLLLEQFDFLHHRGSSHGESRTIRATYPEDYYHDLVMESYELWRMAEAEIGFKVYYPAEQLDIGPSNSESLTAVVDTCLKHSIPHLVLDRGELMEKYSGRVEIPANWVAVCSKYGGVIKPTKAVSMFQTLAYKNGTVLKDNAEVVEIKRDESNGRIVVSTANGESFHGKKCVVTVGAWSKKLVKSVGGIELPILPLEVSVSYWRIKEGFEAEYAIEGGFPTMASYGEPYVYGTPSLEFPGLIKVAIHAGYSCNPDKRSWGREGRLPIAALKEWIDEKFGGRVDSSRPVSSQLCMYSMTPDEDFVIDFLGGEFEKDVVIGGGFSGHGFKMSPAIGRILAELALKGAAEGVELKYFKLARFEENPKGNVKSFADQVKLHQND 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2636298 2637760 + MELO3C003620.2.1 Cme04g00332 324593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00332 412 Gene3D - 8 377 IPR036188 -
Cme04g00332 412 Pfam FAD dependent oxidoreductase 9 372 IPR006076 GO:0016491
Cme04g00332 412 Gene3D - 91 329 - -
Cme04g00332 412 PANTHER PEROXISOMAL SARCOSINE OXIDASE 4 401 IPR045170 GO:0016491|GO:0050660
Cme04g00332 412 SUPERFAMILY FAD-linked reductases, C-terminal domain 231 331 - -
Cme04g00332 412 SUPERFAMILY FAD/NAD(P)-binding domain 7 392 IPR036188 -
Cme04g00332 412 TIGRFAM soxA_mon: sarcosine oxidase, monomeric form 8 397 IPR006281 GO:0008115
Cme04g00332 412 PANTHER PEROXISOMAL SARCOSINE OXIDASE 4 401 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00332 K00306 PIPOX; sarcosine oxidase / L-pipecolate oxidase [EC:1.5.3.1 1.5.3.7] - csv:101211572 744.577
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g666 . . . . . Bpe02g00222 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1863 Cone7ag1768 . . . Csa03g04410 Chy04g00290 . . . . . . . . . Sed13g2098 . . Cma09g00532 . . . . . Bhi09g02378 Tan01g3741 Cmetu04g0136 . Hepe01g2094 Mch11g0632 . . . . . . . . . . . Cme04g00332
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00332 Cme_Chr04 FPKM 9.054187 7.836822 1.253379 1.392539 19.447588 17.424568 18.913025 0.527647 0.29811 0.208172