Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00334 ATGGCGGTCGATCTGATGAGTTTTCCGAAGATGGATGATCAAATCGCTATACAAGAGGCAGCGTCGCAAGGTTTGAAGAGTATGGAGCATTTGATTCGTCTTCTTTCTCACAAGCAATCTTCAAGCCATGTCGATTGTTCTGACCTAACCGATGCAACCGTTTCCAAGTTTAAGAAAGTTATTTCTCTCCTCAATCGAACCGGTCACGCCAGATTCCGCCGAGGTCCGATTTCTTCGACTTCCTCATCGTCTTCCGGTTCATCTGCTCATCTCTCTCAAAACCAGGCCATGACTCTCACTCCTACTCCGTTTACTTCACCGCCGAATGTTCCTGCTCCGCCGTTCACCGCTCCGGCTACTATCGCTCAGCCACAGACGAAAGTCGTCGCTGCGGCCGCGAACTTTCTACCTCAGCCTCAGAGTATGACTCTCGATTTCACTAGACCGAATATTTTGAACTCCAACCCTAAGGGAACCGATTTGGAATTTTCCAAAGAGACCTTCAGTGTGTCTTCGAGCTCATCGTTCATGTCCTCTGCTATCACCGGAGATGGAAGTGTATCCAACGGAAAATTAGGAACGTCTATCTTTTTAGCACCAGCACCGACTGCTTCCGGTGGTAAGCCACCGCTCTCGGTCGCACCTTACAAGAAGAGGTGTCACGAACACGATCATTCCGAGGACTTATCCGGAAAATTCTCCGGTTCAACATCAATTTCCGGGAAGTGCCATTGCTCGAAGAGAAGAAAAAATCGGATGAAGAAGACGATCCGAGTCCCGGCTATTAGTTCAAAAATTGCCGATATTCCACCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAGCCGATCAAAGGATCTCCATACCCGCGGGGGTATTATAAGTGTAGCACAATGAGGGGATGTCCGGCGAGGAAACACGTGGAGAGAGATCCGAACGATCCGGCGATGTTGATTGTAACGTACGAAGGGGAACACCGCCATACACAAAGCTCGTTACCGGAAAATATGGCCGCGGCGGCTGGAGTAGCTTTAGTTTTTGAGTCAACTTGA 1053 49.29 MAVDLMSFPKMDDQIAIQEAASQGLKSMEHLIRLLSHKQSSSHVDCSDLTDATVSKFKKVISLLNRTGHARFRRGPISSTSSSSSGSSAHLSQNQAMTLTPTPFTSPPNVPAPPFTAPATIAQPQTKVVAAAANFLPQPQSMTLDFTRPNILNSNPKGTDLEFSKETFSVSSSSSFMSSAITGDGSVSNGKLGTSIFLAPAPTASGGKPPLSVAPYKKRCHEHDHSEDLSGKFSGSTSISGKCHCSKRRKNRMKKTIRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTMRGCPARKHVERDPNDPAMLIVTYEGEHRHTQSSLPENMAAAAGVALVFEST 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2660995 2663678 + MELO3C003622.2.1 Cme04g00334 324595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00334 350 Pfam Plant zinc cluster domain 217 268 IPR018872 -
Cme04g00334 350 Gene3D WRKY domain 249 323 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g00334 350 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 7 349 IPR044810 GO:0003700
Cme04g00334 350 SUPERFAMILY WRKY DNA-binding domain 268 330 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme04g00334 350 MobiDBLite consensus disorder prediction 72 110 - -
Cme04g00334 350 Pfam WRKY DNA -binding domain 272 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g00334 350 MobiDBLite consensus disorder prediction 74 103 - -
Cme04g00334 350 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 7 349 - -
Cme04g00334 350 ProSiteProfiles WRKY domain profile. 265 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme04g00334 350 SMART WRKY_cls 270 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00334 Cme-Chr4:2660995 Cme11g00698 Cme-Chr11:8243822 1.31E-12 dispersed
Cme07g00334 Cme-Chr7:2126230 Cme04g00334 Cme-Chr4:2660995 4.76E-19 dispersed
Cme04g00334 Cme-Chr4:2660995 Cme08g00590 Cme-Chr8:3758983 7.77E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41144 PF03106 WRKY 6.70E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00334 - - csv:101218039 612.453