Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00340 ATGCGTGTTCCGTTCAGTCGTTCACTCACTTCGTTCTTCTCATTCTTGCTCTTGCTCTTGCTCTTACTCTTACTAACGTACCAAATGGCCAACCCCATAACTCTCCAACAGCTTCGTAATGAGTCCGTTGATCTTGAACATAGTCCAATTGATGATGTGTTTGAGAAACTCAAATGCACAAAAGAAGGTCTTACTTCAGAGGAAGGGGCTAGTCGGCTTCAAGTTTTTGGACCTAACAAGCTTGAAGAGAAGAAGGAAAGCAAAATTCTGAAATTTATGGGATTTATGTGGAATCCCCTGTCATGGGTTATGGAAATAGCCGCTATCATGGCTATTGTTTTGGCTAATGGCGGTGGAAGGCCTCCAGACTGGCAGGACTTTGTGGGAGTCATTGCGCTGCTTTTCATCAATTCAACTATCTCTTTTATTGAAGAAAACAATGCAGGAAATGCAGCTGCAGCCCTTATGGCTGGTCTTGCTCCCAAAACCAAGGTTCTTAGGGACGGCCGGTGGTGTGAGCAAGATGCTTCCATTCTCGTTCCTGGAGACATAATTAGTATCAAATTAGGAGACATAATCCCTGCTGATGCTCGTCTTCTCCAGGGAGACCCTTTGAAAATTGACCAATCTGCTCTAACCGGCGAGTCCCTTCCTGTTACCAAAAATCCTTCAGACGAAGTTTTCTCCGGATCAACTTGTAAGCAGGGAGAAATTGAAGCAGTAGTGATTGCGACTGGTGTGCATACCTTTTTTGGTAAAGCTGCTCATTTAGTGGACAACACCAATCAAGTTGGGCATTTCCAAAAAGTTCTCACTGCCATTGGAAATTTTTGTATTTGCTCCATCGCCATAGGAATTATTATCGAGATTGTTGTCATGTATCCTATTCAACATCGTGCTTATAGGGATGGTATTGACAATTTGTTGGTGCTTTTGATCGGAGGAATTCCTATTGCTATGCCAACGGTTTTGTCTGTCACCATGGCCATTGGTTCCCACCGACTTTCCAAACAAGGTGCAATTACCAAGCGTATGACCGCTATTGAGGAGATGGCCGGCATGGATGTCCTCTGCAGTGACAAGACGGGAACATTAACTTTGAATAAACTCACTGTTGACCAAACCTTGACGGAAGTATTTATCGCGGGTATGGATAAAGAACATGTCATCCTTCTTGCAGCAAGGGCTTCTAGAACAGAAAATCAGGATGCCATTGATGCTGCTATTGTTGGGATGTTGGCAGATCCAAAAGATGCACGAGCTGGTATTAGAGAGGTTCATTTTTTTCCTTTCAACCCTGTAGATAAGAGAACTGCTCTTACTTATATTGATTCTAGTGATAATTGGCATCGAGTTAGCAAAGGTGCTCCAGAGCAGATCTTAAATCTTTGCAATTCCAGCGAAGCCATTAGGAAAACAGTTCACGGAGTGATTGATAGGTTTGCTGAATGTGGACTACGATCACTGGGTGTTGCTAGACAGGAAGTACCGGAGAAAACCAAAGAAAGTCCAGGAGAACCATGGGAACTTGTTGGTCTATTAGCTCTGTTTGATCCTCCAAGGCATGATAGTGCTGAAACCATCCGAAGGGCTCTGAACCTTGGAGTAAATGTCAAGATGATTACTGGTGACCAACTGGCCATTGCCAAGGAAACTGGTCGGAGACTTGGTATGGGATCAAATATGTATCCGTCATCTGCATTACTTTCTCAAGAAAGGGGTTCAGCAGATTCCCTTCCTGTGGATGAGTTGATTGAAACAGCTGATGGGTTTGCCGGTGTATTTCCAGAACACAAATATGAAATAGTGAGAAGGTTACAAGAGAAAAAACATATTTGTGGAATGACTGGAGATGGCGTAAATGATGCTCCTGCACTAAAAAAGGCAGATATTGGAATTGCTGTTGCTGATGCAACGGATGCAGCCAGAAGCGCTTCCGACATCGTCCTCACTGAACCTGGATTGAGTGTCATCATTAGTGCAGTACTGACCAGCAGGGCTATTTTCCAAAGGATGAAGAATTATACGATTTATGCTGTTTCCATCACCATTCGTATAGTGTTTGGTTTTTTGTTGATTGCTTTGATTTGGAAGTTTGATTTCGCTCCATTCATGGTTTTAATTATAGCTATTTTAAACGATGGTAAGGCTCTACCAGAAATGTTGGCCCATGCACTTATCTTCTTTATCATTTTAACGGATCCAGAATTAAGAACAATCATGACTATTTCAAAGGATCGGGTTAAACCTTCTCCTCTTCCAGACAATTGGAAGTTGAAGGAAATTTTCGCTACTGGCATCGTGTTAGGAGGATACTTGGCCTTGATGACAGTGTTGTTCTTTTGGATCATGAAAGATACTGATTTTTTCACGAGCGTATTCTGTGTACCATCTCTAAGGAACAACAACCCAAAAATGATGGCAGCATTGTATCTACAAGTTAGTATCGTGAGCCAGGCCCTTATTTTCGTCACACGGTCTCGAAGTTGGTCCTTTGTCGAACGTCCTGGATTTTTGTTAGTGTTGGCTTTCATAATGGCCCAGCTGATTGCAACTGTAATAGCAGTGTACGCAAAGTGGAGTTTTGCAAGGATACATGGCGCCGGCTGGGGGTGGGCTGCTGTCATTTGGCTATATAGTTTGATAACTTATATCCCTCTTGATATTCTCAAATTTACCATTCGCTATGCTCTTAGTGGAAGGGCTTGGAACAACCTTTTGCAAAATAAGACTGCTTTTACGACAAAGAAAGATTATGGCAAAGAAGAGAGAGAAGCACAATGGGCTACCTCACAAAGAACTATTCATGGTCTTCAACCACCTCAAACCAGCAACATTGTTTCTGATAGAATCGGTTGTGGCAGCGAGCTTTCCGAAATAGCTGAGCAAGCCAAGCGACGAGCTGAAATTGCCAGGATTCGTGAATTGCACACTCTGAAAGGTCGGGTCGAGTCGGTAGTGAAGCTGAAAGGTCTAGACATTGATACTATTAATCAACATTATACAGTCTAA 3012 42.86 MRVPFSRSLTSFFSFLLLLLLLLLLTYQMANPITLQQLRNESVDLEHSPIDDVFEKLKCTKEGLTSEEGASRLQVFGPNKLEEKKESKILKFMGFMWNPLSWVMEIAAIMAIVLANGGGRPPDWQDFVGVIALLFINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWCEQDASILVPGDIISIKLGDIIPADARLLQGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAIGIIIEIVVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDQTLTEVFIAGMDKEHVILLAARASRTENQDAIDAAIVGMLADPKDARAGIREVHFFPFNPVDKRTALTYIDSSDNWHRVSKGAPEQILNLCNSSEAIRKTVHGVIDRFAECGLRSLGVARQEVPEKTKESPGEPWELVGLLALFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSSALLSQERGSADSLPVDELIETADGFAGVFPEHKYEIVRRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFLLIALIWKFDFAPFMVLIIAILNDGKALPEMLAHALIFFIILTDPELRTIMTISKDRVKPSPLPDNWKLKEIFATGIVLGGYLALMTVLFFWIMKDTDFFTSVFCVPSLRNNNPKMMAALYLQVSIVSQALIFVTRSRSWSFVERPGFLLVLAFIMAQLIATVIAVYAKWSFARIHGAGWGWAAVIWLYSLITYIPLDILKFTIRYALSGRAWNNLLQNKTAFTTKKDYGKEEREAQWATSQRTIHGLQPPQTSNIVSDRIGCGSELSEIAEQAKRRAEIARIRELHTLKGRVESVVKLKGLDIDTINQHYTV 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2711497 2717008 - MELO3C003629.2.1 Cme04g00340 324601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00340 1003 Pfam Cation transporter/ATPase, N-terminus 47 110 IPR004014 -
Cme04g00340 1003 Pfam E1-E2 ATPase 160 338 - -
Cme04g00340 1003 SFLD p-type atpase 340 667 IPR044492 -
Cme04g00340 1003 PANTHER CALCIUM-TRANSPORTING ATPASE 31 983 - -
Cme04g00340 1003 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 131 376 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g00340 1003 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 591 706 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g00340 1003 PRINTS P-type cation-transporting ATPase superfamily signature 358 372 - -
Cme04g00340 1003 PRINTS P-type cation-transporting ATPase superfamily signature 639 651 - -
Cme04g00340 1003 PRINTS P-type cation-transporting ATPase superfamily signature 616 635 - -
Cme04g00340 1003 PRINTS P-type cation-transporting ATPase superfamily signature 512 523 - -
Cme04g00340 1003 PRINTS P-type cation-transporting ATPase superfamily signature 534 544 - -
Cme04g00340 1003 PRINTS P-type cation-transporting ATPase superfamily signature 208 222 - -
Cme04g00340 1003 Gene3D - 955 1003 - -
Cme04g00340 1003 SUPERFAMILY HAD-like 354 663 IPR036412 -
Cme04g00340 1003 CDD P-type_ATPase_H 63 892 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme04g00340 1003 Pfam haloacid dehalogenase-like hydrolase 354 630 - -
Cme04g00340 1003 SFLD Haloacid Dehalogenase 340 667 - -
Cme04g00340 1003 SMART Cation_ATPase_N_a_2 44 116 IPR004014 -
Cme04g00340 1003 Gene3D - 161 245 - -
Cme04g00340 1003 PRINTS H+-transporting ATPase (proton pump) signature 647 672 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g00340 1003 PRINTS H+-transporting ATPase (proton pump) signature 616 632 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g00340 1003 PRINTS H+-transporting ATPase (proton pump) signature 474 492 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g00340 1003 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g00340 1003 PRINTS H+-transporting ATPase (proton pump) signature 811 832 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme04g00340 1003 Gene3D - 123 716 - -
Cme04g00340 1003 Gene3D - 355 653 IPR023214 -
Cme04g00340 1003 PANTHER PLASMA MEMBRANE ATPASE 31 983 - -
Cme04g00340 1003 SUPERFAMILY Calcium ATPase, transduction domain A 161 258 IPR008250 -
Cme04g00340 1003 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 63 717 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme04g00340 1003 SUPERFAMILY Calcium ATPase, transmembrane domain M 44 898 IPR023298 -
Cme04g00340 1003 ProSitePatterns E1-E2 ATPases phosphorylation site. 360 366 IPR018303 -
Cme04g00340 1003 Gene3D - 370 517 IPR023299 GO:0000166
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00340 Cme-Chr4:2711497 Cme05g01855 Cme-Chr5:27319766 0 dispersed
Cme07g00175 Cme-Chr7:1156688 Cme04g00340 Cme-Chr4:2711497 1.17E-22 transposed
Cme03g01691 Cme-Chr3:25617688 Cme04g00340 Cme-Chr4:2711497 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00340 K01535 - csv:101219224 1738.01