Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00348 ATGCCTCGCAAGGTGAGCCACGGGTTAGATTACGATGATGATTACGACGACTACGACGACTACGATTATTATGATAACGATTTCGACGTAGAAGAAAAAGGAAAAATACCTGTTACTAAGGAAGAACCTAAGGGGCATAAGCTTTGGCGATGCTCGATTTGCACTTACGACAACGAAGACAGTTTTTCTGCCTGTGATATATGTGGGGTTCTGCGCATCCCTTTGGACAACAACATAAATACTAAAGATGATAGAACAGCAGTCAGCCACAACGACTTCAACTCTTTAATATTATCTTCAGACACCACTAAGATATCTGCAAACAGTGCTGCATTGACTTCAAAAAGTGCACATAGCGTGTCTTCTTCATTGCAAACGAGTAAATCAGGCAATATAGGAGATAAACAGTTGAGTGCCAAAAGTTCAGTCAACTCAGGGACCTCAATTGGAAAAAATACAATAGTTGTTGAAGAACAGAATGCATCAATTAGTGTACCAAAAAATTTACAATCACGTGATAACCGGTCATCAAGCACTTCCACATCAAAGTCAGCAGGCAAATTTGACAGCATGGAGAGCAGCAACCCTTCTGTGGAGTGGGAGAAGTCCCAAAATCTTGCTGGTGGTTTGAACAACATGGTCCTAAATGTTAAATCTGCCTATGCGAATTATATTAGTGGAATGGGAAAAACATCAAATCCGCAGTATAAACCTGATAAGTGGATGCTACCTGATAAAGCTGTAGATACGCTGACTCAGCTGAATCTTGCCATCGTTGGTCATGTTGATTCTGGAAAATCTACTCTCTCAGGAAGATTGCTGCACCTATTGGGACGTGTATCCCAAAAGGAAATGCACAAATATGAAAAAGACGCAAAATCAATAGGCAAGGGTTCCTTTGCTTATGCCTGGGCACTGGACGAGAGTGCAGAGGAAAGAGAGAGAGGAATTACAATGACTGTTGGTGTTGCTTTCTTTGATTCTAAAAGATATCATGTTGTTGTGCTTGATTCTCCTGGCCATAAAGATTTTGTTCCAAACTTGATATCTGGGGCCACACAAGCTGATGCTGCAGTTCTTGTTATCGATGCATCTGTTGGCGCATTTGAGGCCGGTATGGACAGTTCAAAGGGGCAAACAAGGGAACATGTGCAATTAATCAGGAGCTTTGGTGTAGATCAGATTATTGTTGCAGTTAACAAAATGGATGTGGTGGAGTATTCCAAAGATCGCTATGAATTTATTAAGCTGCAACTGGGAACCTTCATTCGTTCATGTGGTTATAAAGATTCATCATTGTCTTGGATTCCATTGAGTGCCATGGCAAATCAGAATCTGGTGACTGCCCCTTCTGATGTACATTTTTTATCCTGGTATCGTGGACCTAATCTTTTGGAGATGATTGATTCTCTTCAACCACCCACTCGAGAATTCTCTAAGCCACTGCTTATGCCGATATGCGACGTTGTTAGATCACTCTCACTAGGACAAGTGTCTGCCTGTGGCAAACTGGAAGCTGGAGCTCTCCAGTCTGGATCTAAGGTTCTAATCATGCCATCTGGAGATAAAGCAACCGTGCGCACTTTAGAACGCAATTCTCAGGCTTGCAAAATCGCAAGAGCGGGGGACAACGTGACTGTTACTCTACAAGGAGTTGAAGCAAGTAGCGTGACGTCTGGGGGTGTCCTATGCCATCCTGATTTCCCCGTTGCTGTTGCAAAACATTTGGAATTAAAGATTCTCACCTTGGAATATGCAACACCTATATTAATAGGATCTCAGTTGGAAATTCATATACACCATGTGAAGGAGGCTGCTAGAGTTGCAAGAATAGTGTCATTGCTCGATTCAAAGACGGGGAAGGTCACGAAGAAGGCACCACGTTGTCTGAGTGCTAAACAAAGCGCAGTGCTTGAGGTCGTTTTACAAAGCCCCGTTTGTGTCGAAGCATTCTCAACTAGTCGAGCACTTGGTCGGGTATTTCTAAGAGCGATGGGAAGAACCATAGCCGTCGGCATTGTGACCCAACTAATCGGAGGCTCCCAATAA 2049 43.09 MPRKVSHGLDYDDDYDDYDDYDYYDNDFDVEEKGKIPVTKEEPKGHKLWRCSICTYDNEDSFSACDICGVLRIPLDNNINTKDDRTAVSHNDFNSLILSSDTTKISANSAALTSKSAHSVSSSLQTSKSGNIGDKQLSAKSSVNSGTSIGKNTIVVEEQNASISVPKNLQSRDNRSSSTSTSKSAGKFDSMESSNPSVEWEKSQNLAGGLNNMVLNVKSAYANYISGMGKTSNPQYKPDKWMLPDKAVDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRVSQKEMHKYEKDAKSIGKGSFAYAWALDESAEERERGITMTVGVAFFDSKRYHVVVLDSPGHKDFVPNLISGATQADAAVLVIDASVGAFEAGMDSSKGQTREHVQLIRSFGVDQIIVAVNKMDVVEYSKDRYEFIKLQLGTFIRSCGYKDSSLSWIPLSAMANQNLVTAPSDVHFLSWYRGPNLLEMIDSLQPPTREFSKPLLMPICDVVRSLSLGQVSACGKLEAGALQSGSKVLIMPSGDKATVRTLERNSQACKIARAGDNVTVTLQGVEASSVTSGGVLCHPDFPVAVAKHLELKILTLEYATPILIGSQLEIHIHHVKEAARVARIVSLLDSKTGKVTKKAPRCLSAKQSAVLEVVLQSPVCVEAFSTSRALGRVFLRAMGRTIAVGIVTQLIGGSQ 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2760324 2768060 - MELO3C003637.2.1 Cme04g00348 324609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00348 682 Pfam Elongation factor Tu GTP binding domain 254 471 IPR000795 GO:0003924|GO:0005525
Cme04g00348 682 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 574 678 IPR009001 -
Cme04g00348 682 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 490 IPR027417 -
Cme04g00348 682 Gene3D - 245 475 IPR027417 -
Cme04g00348 682 PANTHER TRANSLATION FACTOR 78 678 - -
Cme04g00348 682 CDD HBS1_C_III 569 677 - -
Cme04g00348 682 Pfam Elongation factor Tu domain 2 502 564 IPR004161 GO:0005525
Cme04g00348 682 Pfam Elongation factor Tu C-terminal domain 575 677 IPR004160 -
Cme04g00348 682 SUPERFAMILY Translation proteins 473 568 IPR009000 -
Cme04g00348 682 MobiDBLite consensus disorder prediction 116 145 - -
Cme04g00348 682 Gene3D Translation factors 572 679 - -
Cme04g00348 682 PANTHER OS04G0595300 PROTEIN 78 678 - -
Cme04g00348 682 MobiDBLite consensus disorder prediction 165 200 - -
Cme04g00348 682 CDD EF1_alpha 255 474 - -
Cme04g00348 682 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Cme04g00348 682 PRINTS GTP-binding elongation factor signature 255 268 IPR000795 GO:0003924|GO:0005525
Cme04g00348 682 PRINTS GTP-binding elongation factor signature 314 322 IPR000795 GO:0003924|GO:0005525
Cme04g00348 682 PRINTS GTP-binding elongation factor signature 334 344 IPR000795 GO:0003924|GO:0005525
Cme04g00348 682 PRINTS GTP-binding elongation factor signature 350 361 IPR000795 GO:0003924|GO:0005525
Cme04g00348 682 PRINTS GTP-binding elongation factor signature 395 404 IPR000795 GO:0003924|GO:0005525
Cme04g00348 682 Gene3D Translation factors 479 568 - -
Cme04g00348 682 SUPERFAMILY Ran binding protein zinc finger-like 45 72 IPR036443 -
Cme04g00348 682 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 251 482 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00348 Cme-Chr4:2760324 Cme11g01780 Cme-Chr11:25980607 4.55E-91 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00348 K14416 - csv:101219939 1078.54