Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00367 ATGCCCACGTCAGTCTCCGAAACAAGGTCGCCGATGCCTTTGCTGTTCCGGCGGCACTCAAGTGGCGAAATAAAGAACTTGACGTCGGTTTCCAGCAGCCTCTTGCCGGCGTTTGGAACAGTTGTTAACGATGGATACACACACCTGAACAAGTTCGTAATAGTTCCGTATGACAGAAGATATCGGTGGTGGCAAACTTTCCTGGTAGTACTAGTGGTTTACTCAGCGTGGGTATCACCCTTTGAGCTTGCTTTCAAGAAAGTGGCAACTGGGTCTCTTTTACCTGTTGATTTGGTAGTGGATGCATTCTTTGCCATTGATATTGTGTTGACCTTCTTCGTGGCTTACTTGGACAAAGGCACATATCTCCTCGTCGATGATCATAAGAAGATAGCTCTACGTTACCTTACAAGCCTGGGGTTCCCCATGGACGTAGCCTCCACTCTTCCATTTCAGGTAATATACAGAATTTTCACTGGAAGGATGCATCGTAGTGAGGCCTTCGGCTTCCTCAACTTACTTCGGTTCTGGCGACTAAGGCGTGTTAGTCAACTTTTCACAAGGCTGGAGAAAGACATACGCTTTAGTTACTTTTATACAAGACTCGCCAAACTAATTTGTGTTACACTGTTGGCAGTTCATACGGCTGGTTGTTTCTACTATTGGTTAGCAGTTCATCATAAAGATTCAGAAAATACATGGATTGGAATTGAAGTCGAAGATTTTCAGAGTAGAAGTATCTGGCTTGGGTACACCTATTCGATATATTGGTCCATTGTCACACTTACTACGGTTGGTTATGGGGACTTGCATGCAGTTAATCTGGGGGAGAAGATTTTTAGCATCTGCTACATGCTATGCAACATTGGCCTCACATCTTATTTGATAGGAAACATGACAAATCTCATCGTTCACGCCGCTATCCGAACATTCATCATGAGGGATTCCATAAATGAGATATTGCGATATGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCGCACATGCAACTCAAGTTCAAGACAGCAGAGTTGAAGCAAGAACAGGTCTTGGAGGATTTACCTAAAGCAATCAGATCCAGTATTGCCCAGCACCTTTTCCGTGATACCGTTGAGAATGCATATTTATTCAAGGGGCTCTCTGAAGACCTTATTGTTCAATTGGTCTCTGAGATGAAAGCAGAGTATTTTCCACCTAAAGTTGACATTATAATACAAAACGAGATACCAACAGATTTCTACATTTTGGTGTCTGGAGCAGTGGACGTGATCTCGTACAAGACTGGAACTGAACAGGTAATATAG 1320 43.33 MPTSVSETRSPMPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYTHLNKFVIVPYDRRYRWWQTFLVVLVVYSAWVSPFELAFKKVATGSLLPVDLVVDAFFAIDIVLTFFVAYLDKGTYLLVDDHKKIALRYLTSLGFPMDVASTLPFQVIYRIFTGRMHRSEAFGFLNLLRFWRLRRVSQLFTRLEKDIRFSYFYTRLAKLICVTLLAVHTAGCFYYWLAVHHKDSENTWIGIEVEDFQSRSIWLGYTYSIYWSIVTLTTVGYGDLHAVNLGEKIFSICYMLCNIGLTSYLIGNMTNLIVHAAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTAELKQEQVLEDLPKAIRSSIAQHLFRDTVENAYLFKGLSEDLIVQLVSEMKAEYFPPKVDIIIQNEIPTDFYILVSGAVDVISYKTGTEQVI 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2916235 2919710 + MELO3C003656.2.1 Cme04g00367 324628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00367 439 Pfam Ion transport protein 61 305 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme04g00367 439 Gene3D Jelly Rolls 348 439 IPR014710 -
Cme04g00367 439 SUPERFAMILY Voltage-gated potassium channels 56 304 - -
Cme04g00367 439 PANTHER POTASSIUM CHANNEL AKT1 3 62 IPR045319 GO:0005249|GO:0006813
Cme04g00367 439 PANTHER POTASSIUM CHANNEL AKT1 62 438 IPR045319 GO:0005249|GO:0006813
Cme04g00367 439 Gene3D - 63 305 - -
Cme04g00367 439 SUPERFAMILY cAMP-binding domain-like 310 433 IPR018490 -
Cme04g00367 439 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme04g00367 439 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme04g00367 439 PRINTS EAG/ELK/ERG potassium channel family signature 295 304 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme04g00367 439 PRINTS EAG/ELK/ERG potassium channel family signature 251 268 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme04g00367 439 PRINTS EAG/ELK/ERG potassium channel family signature 277 288 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme04g00367 439 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme04g00367 439 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 62 438 - -
Cme04g00367 439 CDD CAP_ED 381 439 IPR000595 -
Cme04g00367 439 ProSiteProfiles cAMP/cGMP binding motif profile. 381 439 IPR000595 -
Cme04g00367 439 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 3 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00367 Cme-Chr4:2916235 Cme06g01249 Cme-Chr6:10104936 3.23E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00367 K21867 - csv:101215177 858.211