Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00370 ATGGCTGATTCTGGTTCTGAGTTGTGTCCTGTTCAGTCTGTTGTGTTGGGGCACAAATCCAAAAGCAACTCCTTTTTCAGTGCCCCTGGTCTCTTTGTTGGCTTAAATTTCAAAGTGGCTTCAGATTCTGATTCAGTCAGGAGTCCCACCTCTCCTTTAGAACTTAGGGTGTTTTCAAATCTTAGCAACTCCGTAGGGTCCCCTAAATCATCCCATGATGGACATAGAAGGAGCTGGGGTTGTAGTAAAGTAGGATTAGGGATTGTTGATTCTCTTGATGATGATAATAAGCTGTCTGGTAAAGCTCTTGGATCATTTGAGAGTAAGAACATCATTTTTGGACCTCAAGTGAGAACCAAGAATCAGACCCCAAATCTTCAAATTGACACAGTTTTTCCCCAGGCAGGTCCTAGATCTTTACCTAAAAATTGTCCCAATTTTCCCCCACCGCAGCTCAAAACACCGAGCTACAGCTCGGAGGTTCTCTTTGAAATTGGAGAACCATTAGAATTCAAACCTTCAAAGAAGAGTGGGGCGTGTTCCTTGGACTCGCCTCGGTTTGTTTCAGCATCTTATGGTGCAAAAGGTCGTAGCTTCTTTCATTCTACGAATCCATTTGTGAAGAAAGTGACCACGAATGGTGATTCTGAGCCTCAAGACAAAACTTTGTCTGCAGATATTTCAACCCCGGCATCTATAACGGTGCCTGTTCCTGGAATCATCGAGTCTCTTTCCGCAAGCGAAATCGAGCTTTCCGAGGATTATACCCGTGTGATATCCCACGGGGAGAATCCAAAAACCACTCACATTTTTGGTGACTGCATTTTAGAATGTCACTCTGATGATTTGAACAATTTGAACAACTTGAACAAGAATGAGATGAATGAGATAGGAGCTCCTCTATCAATTAGAAGCAGCTTGGACATTCCACCTTTGCAATGTCAACCAATTGATTTTCTAAGTTTTTGTTACTTTTGTAACAAGAAACTTGAAAGTGGGAAAGACATTTACATTTACAGGGGCGAGAAGGCGTTCTGCAGCTCCGACTGCCGCTATCAGGAGATCATGATTGAAGAAGAACCGGAGAAACCCATTAGCGAAATTTTCCAACATTCTTCAACATCTGGAGATGGTAAAGAAGAGATCCAAACTCATGGCACCATTTTTGAATAA 1173 42.46 MADSGSELCPVQSVVLGHKSKSNSFFSAPGLFVGLNFKVASDSDSVRSPTSPLELRVFSNLSNSVGSPKSSHDGHRRSWGCSKVGLGIVDSLDDDNKLSGKALGSFESKNIIFGPQVRTKNQTPNLQIDTVFPQAGPRSLPKNCPNFPPPQLKTPSYSSEVLFEIGEPLEFKPSKKSGACSLDSPRFVSASYGAKGRSFFHSTNPFVKKVTTNGDSEPQDKTLSADISTPASITVPVPGIIESLSASEIELSEDYTRVISHGENPKTTHIFGDCILECHSDDLNNLNNLNKNEMNEIGAPLSIRSSLDIPPLQCQPIDFLSFCYFCNKKLESGKDIYIYRGEKAFCSSDCRYQEIMIEEEPEKPISEIFQHSSTSGDGKEEIQTHGTIFE 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2937116 2939975 + MELO3C003658.2.1 Cme04g00370 324631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00370 390 Coils Coil 276 296 - -
Cme04g00370 390 MobiDBLite consensus disorder prediction 369 390 - -
Cme04g00370 390 ProSiteProfiles Zinc finger FLZ-type profile. 318 362 IPR007650 -
Cme04g00370 390 PANTHER FCS-LIKE ZINC FINGER 11 1 385 IPR044585 -
Cme04g00370 390 PANTHER FCS-LIKE ZINC FINGER 11 1 385 - -
Cme04g00370 390 Pfam zinc-finger of the FCS-type, C2-C2 315 360 IPR007650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00370 - - - csv:101223099 716.842
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01673 Cme04g00370 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02072 Cme-Chr1:29547059 Cme04g00370 Cme-Chr4:2937116 1.76E-19 dispersed
Cme04g00370 Cme-Chr4:2937116 Cme04g01089 Cme-Chr4:14911141 1.36E-52 dispersed
Cme01g01575 Cme-Chr1:20872555 Cme04g00370 Cme-Chr4:2937116 1.15E-39 transposed
Cme03g01673 Cme-Chr3:25466676 Cme04g00370 Cme-Chr4:2937116 4.65E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g390 . . Bda01g00719 . . . . Bma01g02147 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1741 . . . . Chy04g00329 Cme03g01673 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01282 Cam08g1740 Cec08g1322 Cco08g1443 Clacu08g1437 . Cre08g1224 Lsi08g01145 . . Cme04g00370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010804 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 0 1 5 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00370 Cme_Chr04 FPKM 40.977081 47.413235 24.150494 23.598644 19.930601 16.842621 16.023851 30.179398 29.57905 32.168354