Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00372 ATGGCAGAGGTTGCAACTTACTCAAAGCCTCAACCAATTGGGACGGAAGAAAATCAACATATGACATGCAGAGGAAAGGAGATAAGAACTGTGTACACTGAGCAGTTTGATTCTCTGGCGTTGCCCTTTGAGAAATCAAATGACCCCCAAGAGGTGTTGGAGAGGGAATACATGCAACATGGATGTGCACATTATAGGCGAAGGTGTCGTATCAGAGCTCCCTGTTGTAATGAAATATTTGATTGCCGTCATTGCCATAATGAAATAAAGAATAGTATTTGTGTTGATCAGAAAGAAAGACATGAGATCCCACGCCATGAAGTCAACCAGGTTATATGCTCACTCTGTGGTACAGAACAGGAGGTTCGCCAAGACTGTATCAACTGTGGTGTGTGTTTTGGAAAATATTTCTGCGAGAGTTGCAAGCTGTTTGATGACGATACCTCTAAGAAGCAGTATCACTGTAATGGCTGCGGAATTTGTAGAATTGGAGGGCGCGAGAACTTTTTCCACTGCCATAAGTGTGGTTGCTGTTATTCAATTCTTCTAAAAAATAGCCATCCTTGCGTTGAAGGGGCAATGCATCATGACTGTCCTGTTTGCTTTGAGTACCTATTCGATTCAACGAACGATGTTACAGTAATGCCATGTGGACACACCATCCATCAAAATTGCTTGAAGGAGATGAGAGATCACTTCCAATATGCTTGCCCTCTTTGCTCCAAGTCCGTTTGTGATATGTCCAAGGTGTGGGAAAAAATTGACATGGAAATTGCAGCTACGCCCATTCCAGAGCCGTACCAAAACAAAATGGTCTGGATTCTTTGCAACGATTGCGGTACGACGTCGAAGGTGCAGTATCATGTTGTGGCTCAAAAGTGCTTGAATTGCAAGTCGTACAACACCAGACAGACCAGAGGCTAA 924 43.51 MAEVATYSKPQPIGTEENQHMTCRGKEIRTVYTEQFDSLALPFEKSNDPQEVLEREYMQHGCAHYRRRCRIRAPCCNEIFDCRHCHNEIKNSICVDQKERHEIPRHEVNQVICSLCGTEQEVRQDCINCGVCFGKYFCESCKLFDDDTSKKQYHCNGCGICRIGGRENFFHCHKCGCCYSILLKNSHPCVEGAMHHDCPVCFEYLFDSTNDVTVMPCGHTIHQNCLKEMRDHFQYACPLCSKSVCDMSKVWEKIDMEIAATPIPEPYQNKMVWILCNDCGTTSKVQYHVVAQKCLNCKSYNTRQTRG 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2948953 2954071 - MELO3C003660.2.1 Cme04g00372 324633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00372 307 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 36 307 - -
Cme04g00372 307 ProSiteProfiles Zinc finger CHY-type profile. 55 131 IPR008913 GO:0008270
Cme04g00372 307 ProSiteProfiles Zinc finger RING-type profile. 198 241 IPR001841 -
Cme04g00372 307 Pfam Ring finger domain 197 240 IPR001841 -
Cme04g00372 307 Pfam Zinc-ribbon 245 303 IPR039512 -
Cme04g00372 307 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 36 307 - -
Cme04g00372 307 SUPERFAMILY CHY zinc finger-like 59 133 IPR037274 GO:0008270
Cme04g00372 307 SUPERFAMILY Zinc hairpin stack 134 191 IPR037275 -
Cme04g00372 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 243 IPR013083 -
Cme04g00372 307 SUPERFAMILY RING/U-box 197 245 - -
Cme04g00372 307 Gene3D - 269 307 - -
Cme04g00372 307 ProSiteProfiles Zinc finger CTCHY-type profile. 133 197 IPR017921 -
Cme04g00372 307 SMART ring_2 198 240 IPR001841 -
Cme04g00372 307 Pfam CHY zinc finger 62 143 IPR008913 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00372 K10144 RCHY1, PIRH2; RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27] - csv:101203062 666.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01729 Cme-Chr2:24301944 Cme04g00372 Cme-Chr4:2948953 8.99E-49 dispersed
Cme04g00372 Cme-Chr4:2948953 Cme06g00698 Cme-Chr6:4528503 5.75E-78 dispersed
Cme04g00372 Cme-Chr4:2948953 Cme11g01843 Cme-Chr11:26636839 3.51E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g389 Blo01g01360 . Bda01g00720 . . . . Bma01g02148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00331 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000646 2 6 1 2 2 3 4 3 3 3 3 3 4 3 3 4 3 4 4 3 3 3 4 3 3 4 3 8 4 3 101
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00372 Cme_Chr04 FPKM 79.938667 90.763016 28.338856 28.697578 14.690252 16.204805 14.959868 23.866682 23.165119 23.730787