Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00374 ATGTCTAAACCGTTTTCTCTCGCCCTTTGTCCCAGCTTTTCTTTGCGATTTAGCTCGTTTCTCTGTTCTTCTTACTCTCTTTCGCAATTGCCACCTTCCCTTTGCCATTTCCTTCTTAATTTCCATCGACGATCAGAAGAAGATTTGAAGTTTGAAACATGGCAAGTCGCGTCAAGGAAGAAGAGCGAATTGAAAGGACCCTACTGTGAATATATAGAGGAAAAAGCTACAAGTATTTCCCCAGGCTATTGTTACATGATTACTTTAAAGTCAGAAGTTGAATGCAATACTGATCGCCACCTGCTTGAGCTTCACTCTTCGCAGGATGGACCGCAATACGTCTGTACAACATTCTTGACTTTTGTCTGTACAAATTGTAGTGGAGTACATCGCGAGTTCACTCATAGAGTGAAGTCAGTGTCAATGGCAAAATTCACGGCAGAAGAGGTGGTTGCTCTTCAAGCTGCGGGAAATCAGAGAGCACGGGAGATATATTTAAAAACATGGGATCCCCAGCGTCATTCTTATCCAGAAAACAGCGATCTCCATCGGCTTCGGAACTTCATCAAGCATGTTTATGTTGATAGGAAATACTCGGGTGAGAGAGGTGTTGATGAGCTCCCTAGGTTGAGACTTACTGAAAAGGACACATCCCAAGAAAGGAGAAAGGTTGCTCCATATTGTGGTGGATTACAGAACTTGCAAGTTGAAATGCCAAGATCGAGTTCAAAGAGGGAAACCAGGAGTCCAATTTTTTACTATGATGAGAGAAGCAGTCCTCGGTATTCAAAAGAAAACAACAGATATGGAGGCTATAGGAGAAGCTTTACACGCATTGAGGTTGTAGATGACAGAATCAAAGATGATAAACCTGGAATTTGCAGGCTCTCAAATGGAGATAGCAAGGCGGTTATCAAGTTGAGTCGCAGTCAGGAAAATTTAGCGAAGTCTTCTTTTGCAGTTGAATTTAATAATAAAGTTACGACTGGCAAAAAGGAACCTACACGAAGAGTTGAGGAAGATGCAAGAACCAATAAAGGAATAAACGCTGGCGGTTCTGATCAGAATGTTGTTTGTGTTGATCCCGTGGAAACTAAAAGAGACAACATAGAGAGCCTAATTGATCTTAGCATCAGCTCCGAGCCTTCTGATGCCACTGCCGCTTCATCACAGACCCAACAGATGCCTCCATCTAACAATGACAACTGGAACGCCTTTGAGCCATCTTCAACGAAAAGCACTTCAACAGCCCCCAATGCAAATACTCTGGAAGCTTTGCTTTTTGAATTAACAGTACCATCAACTGGAGCTGATAAAAATCCGACTGATGGACCTGCAAATGCTTGCACTCCAGCAACTCTTTCTGGAAGTACTCTTACCCCAGATTTCACTATGGGGCAGACAGTACTACCAATCAGCGTTGAAGCTTCTGTAGCTGAGACTAATGAAAGTGTAGCGTTGCAAACTTCTAATGCAAGCCCTCCGCAACTCACTTCCAATAAGGGTGGCGATATTGGACTACAAGTCATTAATGGACAGCAGCTTCCAAGCACGCAGCAAAAACAGACTTTTAATTATCCTTCTGCAGATTTTGATTTGAATTCACAACTGATGACTTCAGCTGCTGTTCCAAATTTTGAATGGACTTCTTCATCGGGATCAAATGCTCAAGGATATTCAAGTGTTTCAACTGACAAGATAGTTGCTGCAGATTCTAAACCAGCTCAGGGTGCCATTATTGGAGTTGGATCCCAACCTCCATCTTTGGAAAAGAGTTCTTCTACTGGAAGAAAGGAACTTCCTCTGGACTTTTTTACTGCTAACTACCCTCAAGTTCGCAGCTCACATCCAGGTTGGCAGACTGGAACTCAACATGTGATGGGTCAAAACTTGCAGTATTATCCTACCCCAGTGGCTGCAAGACCAACAAACCCATTTGATCTTGATGATGAAAAGAGTAAATTTTACCCACAGAGTGCTCGTGCTAGCATGCCCCCTCTTACTGGCTTAACGGAGAGATATGGCTATCAACCCGAAGCCCAATATTCAGGTACATACGTGGGGCAACAAGTCTACGGGAGTATTCCGTCTTTGAGACCCCAGGGAGTAGGAAACTTCGGATCATCCTCATTCCCAAGTCCTTTTGGCTCCTTCAATAACACAACTCAGCAGCCGAGTAGCAGATCGTATCCAGCACCTAACAACACAAATCCAACTGCTCCTTCGTTTCGCAATAATCCCTTTGGATAG 2250 43.51 MSKPFSLALCPSFSLRFSSFLCSSYSLSQLPPSLCHFLLNFHRRSEEDLKFETWQVASRKKSELKGPYCEYIEEKATSISPGYCYMITLKSEVECNTDRHLLELHSSQDGPQYVCTTFLTFVCTNCSGVHREFTHRVKSVSMAKFTAEEVVALQAAGNQRAREIYLKTWDPQRHSYPENSDLHRLRNFIKHVYVDRKYSGERGVDELPRLRLTEKDTSQERRKVAPYCGGLQNLQVEMPRSSSKRETRSPIFYYDERSSPRYSKENNRYGGYRRSFTRIEVVDDRIKDDKPGICRLSNGDSKAVIKLSRSQENLAKSSFAVEFNNKVTTGKKEPTRRVEEDARTNKGINAGGSDQNVVCVDPVETKRDNIESLIDLSISSEPSDATAASSQTQQMPPSNNDNWNAFEPSSTKSTSTAPNANTLEALLFELTVPSTGADKNPTDGPANACTPATLSGSTLTPDFTMGQTVLPISVEASVAETNESVALQTSNASPPQLTSNKGGDIGLQVINGQQLPSTQQKQTFNYPSADFDLNSQLMTSAAVPNFEWTSSSGSNAQGYSSVSTDKIVAADSKPAQGAIIGVGSQPPSLEKSSSTGRKELPLDFFTANYPQVRSSHPGWQTGTQHVMGQNLQYYPTPVAARPTNPFDLDDEKSKFYPQSARASMPPLTGLTERYGYQPEAQYSGTYVGQQVYGSIPSLRPQGVGNFGSSSFPSPFGSFNNTTQQPSSRSYPAPNNTNPTAPSFRNNPFG 749
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2972903 2979989 - MELO3C003662.2.1 Cme04g00374 324635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00374 749 MobiDBLite consensus disorder prediction 330 355 - -
Cme04g00374 749 Gene3D Arf GTPase activating protein 94 205 IPR038508 -
Cme04g00374 749 SMART arf_gap_3 98 206 IPR001164 GO:0005096
Cme04g00374 749 MobiDBLite consensus disorder prediction 330 344 - -
Cme04g00374 749 PANTHER ARFGAP/RECO-RELATED 110 749 IPR044820 GO:0005096
Cme04g00374 749 Pfam Putative GTPase activating protein for Arf 108 199 IPR001164 GO:0005096
Cme04g00374 749 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 110 749 - -
Cme04g00374 749 MobiDBLite consensus disorder prediction 378 417 - -
Cme04g00374 749 ProSiteProfiles ARF GTPase-activating proteins domain profile. 94 206 IPR001164 GO:0005096
Cme04g00374 749 MobiDBLite consensus disorder prediction 697 749 - -
Cme04g00374 749 CDD ArfGap_AGFG 108 198 - -
Cme04g00374 749 SUPERFAMILY ArfGap/RecO-like zinc finger 108 199 IPR037278 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00374 - - - cmo:103503792 1263.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00374 Cme-Chr4:2972903 Cme05g01965 Cme-Chr5:28199915 2.91E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00335 . . . . . . Bpe04g00038 . . . . . Cma09g00486 . . . . . . . . . . . . . . . . . . . . . . Cme04g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011757 1 2 0 1 1 0 2 1 0 1 1 1 2 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00374 Cme_Chr04 FPKM 29.418159 31.125746 20.122599 18.481375 31.769196 35.51421 30.230268 24.666798 25.003548 22.854666