Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00376 ATGGAAAATAGCTTAGAAAACTCACATGGTACTGATATACCGAAGAAATCGAGATCTTTGGATCTCAAGAGTTTGTACGAATCAAAGGTCTCCAAAGAGGTTCAGAATAAGAGGTTGAAGAGAAAGGCCCGGGCAGAGGATGGTGATGGGCAGAAGAACGAGAGGAGAAATAGGAAAAAAGTGTCCCTCAGTAATTTTAGTAGTATTTATAGTAGGAGCAGGAAGAGTTTGGACGAAGTGTATGATGCTGGGCTAGGTTCAAGTGGGCATGATTCAAAGAAGGCATTAAAGTCAGAGTCAAGAGACAAGTTAAATAGCAGTAGTGAGTTTAACGAAGTTCCACTTATTTTAGATGAAAATGTTATGCACATTCCTAAGCGTAAGAGGGGTGGTTTTGTTAGGAGAAAGAAATCTCTTGATGGTCAGATTTTGAAACCATCTGGGCAATTGGATGCTAAAGCTGGGTCATTGGATGATAAAGCTGGTATTGTGGATCAGATTGCTAAATCTAGTGTCAAAGATTCAAGTGATCAGGTGGAATGCTGTAAGACTAATAGAAAGCTTGCATTCAAAGATTTAAAGGAGAAAGAGCAGAAGGAGTTGAGCTCAGCTCAGCATCTGAAGAAGGAAGATGGGCAGGCTGACCAGTTGACTAGAGAAAATGAATTAAATCCTGCTTCGTGTTTGAAGGAGGAAGGTGAGCATATCGATCATTCAGTTGTAAAGCCTGTAAGTCCGTCATCCAAAAAATCTCAAAAGAATGTCAGGAAAAGAAAGATTTCTGGATCCAGGAGCAAAAGTAATTCAAAGGAGGAAGATGATGAAGAGAATCTTGAGGAGAATGCTGCGAGAATGTTATCATCAAGATTTGATCCAAATTGTACTGGGTTTTCGTCAAACACGAAGGGCTCTTTGCCGCCAACAAATGGGTTATCCTTTTTGTTGTCTTCTGGACATGATAATGTTAGTCGTATTTTTAAGCCTGCCTGGGTATTGAACAGGAGGATCAAAGTCTTTTGGCCTTTGGACCAAATCTGGTACTACGGGCTCGTGAATGACTATGATAAAGAAAGGAAGCTTCATCATGTTAAATATGATGACCGTGATGAAGAATGGATTGATCTTCAAAACGAAAGGTTCAAACTGTTGCTGCTTCCTAGTGAAGTTCCTGGTAGGGAAGAACGTAGGAAGTCAGCAGTGGGAAATGATCTTGCTAATGAGAAAGGGAGATCAAGGTCCAGGAAAGGAAAAGAAACCGATGCTGTGATTTTGGAGGATGATTGCAATACTAGTAGCTATATGGATTCCGAGCCAATCATCTCTTGGTTGGCTCGATCTACTAACCGCAATAAATCGTCTCCCTCTCATAATTCAAAGAGGCAGAAAACTTCCAGCTTATCTTCAAAATCAGGGTCCCAGGCAAATGAAAACCCAGCAAATTTACTTGTTAAATCTTCAGGATTGGCAGAAAGATTAGCAGATGTGGATGGACAAGAGAAATCTGCTTCGGAAACAACCACTTGTTCTACGACACGCAAACTTCCGATTGTATATTTTAGGAAAAGGTTCCGCAACATAGGCACTGAAATTCCCCATAAGCGCGAAACAGATTTTGCTTCTAGAAGAACTCATGCTTCTCTTGCCTTTTCTTTTTCTAATGTTGAAATTGATGATGTGGAAGAACCAGATATTTCTCCCAGAAGGTCAGAAGCGCATAGGTTACTATGGTGTGTTGATGATGCTGGGTTATTACAGTTGGCTATTCCATTGATGGAAGTGGGGCAGCTCAGGTTTGAGCTAAGCATTCCGGAATATTCATTCTGGAATGTCACTTCTAGTGCCGAGACTTTTTGGTTATTCCATTTGGCAATGCTCATCCAACATGGTACATTGACCTTACTATGGCCAAAGGTTCAATTAGAGATGTTATTTGTAGATAATGTGGTTGGGTTGAGATTTCTTCTGTTCGAAGGTTGCTTGATGCAGGCAGTGGCTTTCATTTTCCTGGTCCTGAAATTGTTTCAGTCACCTGGTAAACAGGGAAGGTATGCTGATTTTCAATTTCCCATCACCTCTATCAGGTTCAAATTCTCATGCCTTCAGGATATAGGAAAGCAGCTTGTGTTTGCGTTCTATAACTTCTCAGAATTAAAAAATTCTAAGTGGGTTCACCTAGACAGGCTGAAGAAGTATTGCTTAATTTCTAAGCAGCTTCCATTAACCGAATGCACCTACGATAATATCAAAAAGCTTCAAAATAGCAAAACTCAGTTCCGTGCATCTCCATTTTGTGGCCGGTCTTCCTCTGTAAAGGGCACACAGAAGATTAGTAGTCTTGGTATCAACCTCAAAGGAGCTGCCTGCCTGCTTATGGAACGGTGTGTGGCTCATTTAAGTTTGCAACATCATGATTCGATAGAGCATCAGGAAAATTATGGTAGATTGACTGTAGATGATATGTTGACGGATGACTGTGCTAATAGTCTTAGTACGTCATCAAAGGCATCTGATAGATGGAATTCCTGTCCTCAGTCAGATTTAGGGACTGGTATCTCCGATTGTGAGGATGGAGATGGGGTACAGTCCTCTCAGTATAAAAGAAGTACTCCTGTTGCTCCGACTTGTGCAGGGTCTCAGGATACAGACAAGGCCAGCAATGATGTCAAGAGGCGGATTCGACCAGCGGGCAAGAACATATCGGGGAAAACAATGCCTTTACCTAAGGTGGCTAGATCTGATAAAGATTCATTTTTGAATGACCTTAGTGTTGAGATTCCATCATTTCAGCCTTTGGATGGGGAGTTGCACGGCCCTCAGCAGTCCATGGATGTAGGATGGAATGGAAATGCTGGTGTCATTCCCAGCCCTAACCCAACGGCACCACGCAGCACTTGGCATCGAAATAAGAATAACTCAACATCACTTGGATTAGCCTCACATGGATGGTCAGATGGAAAGAGTTCTTTTATCAACGGTTTGGGAAATAGGACCAAGAAACCCCGAACACAGGTGTCTTACTCATTGCCTTTTGGAGGTTTTGATTATAGCTCAAAGAGCAGAAACTCTCACCCTAAAGCAATTCCTTCCAAGCGAATTAGAAGGGCAAGTGAAAAAAGGTCGGATGTGGCTAGAGGATCCAAAAGGAACTTAGAACTACTCTCATGTGATGCGAATGTGTTAATTACACTTGGTGATAGAGGTTGGAGGGAATGTGGAGCAAGGGTGGTATTGGAGGTATTTGATCACAATGAGTGGAAGCTTGCTGTGAAACTCTCAGGAATTACTAAATACTCTTACAAGGCTCATCAATTTTTGCAGCCTGGATCTACAAATCGATACACACATGCCATGATGTGGAAGGGAGGAAAGGATTGGATCCTGGAGTTTCCAGATAGGAGCCAGTGGGCAATCTTCAAGGAGTTGCATGAGGAGTGTTACAATCGAAACATTAGAGCAGCCTCCGTTAAGAATATTCCAATTCCTGGTGTTTGCTTGTTAGAAGAAAATGATGAATATGTAGCAGAAATTGCATATATGCGGAATCCTTCTAAGTACTTCCGGCAGGTAGAAACAGATGTTGAAATGGCTTTGAATCCAGCCCGCGTCTTGTATGACATGGATAGTGATGATGAGCAGTGGATCAAGGATATTCGAACTTCTTCGGAAGTTGGAAGTAATAGTGGCTTGGGGGAGGTTTCAAGTGAGGTGTTTGAGAAGACGGTGGATGCATTTGAGAAGGCTGCATACTCTCAGCAACGTGTTGAGTTCACAGATGATGAGATAGCTGAGGTGATGAATGAAACTTTGTTGTCAGGTTTGACGAAGGCCATTTTTGAATATTGGCAGCAGAAAAGGAGGCGGAAGGGAATGCCTTTAATTCGACATCTTCAGCCTCCTCTTTGGGAAACCTATCAACAGCAATTAAAAGATTGGGAGTGTACAATTAACAAAAGCAACACCAGTTTCTGCAATGGATATCATGAGAAGGCTGCATCAGTTGAGAAACCACCAATGTTTGCATTCTGTTTGAAACCCCGAGGCTTGGAAGTCTTCAATAAAGGCTCTAAGCAAAGGTCGCACCGGAAGTTTTCGGTGTCTGGTCATAGCAATTCCATCGCTTATGATCATGAAGGATTGCATGGTTTTGGTAGAAGATTGAATGGGTTTAGCCTTGGGGACGATAAGATGGCCTATATTGGCCATAACTATGAGTTTTTGGAAGATTCTCCTTTGATTCACACGTCGTCCAGTTTATTTTCGCCACGACTTGAAGGCGGCATTTTGAGTAATGATGGGTTGGAGAGGAATTTTCTACCAAAACTTCACAAGAGCAAGTCCAGGAAGTATGGGGCATGGGCTTCTCCATACGACTCGGGGATGGCTTCCTTCAATCAGAGAATGATTGGAAAGAGAGACGGGCTAAATAGGTGGAACAATGGTTATTCTGAGTGGTCAAGCCCACGGCGTTATCCATTTGATGGGTCTCAAAGGCAGATCCTCGAACAATTGGAAGGTTCCGATGTTGACGAGTTCAGGCTCCGCGATGCATCTGGTGCTGCTCAACATGCACGCAATATGGCTAAGCTCAAGAGAGAGAAGGCCAGGCGATTGCTATACAGAGCGGACCTTGCGATTCACAAGGCAGTGGTTGCTATCATGACCGCTGAAGCAATGAAAGCTGCTTCCGAGGATGACTCCAATGGTGATGGATAA 4713 42.75 MENSLENSHGTDIPKKSRSLDLKSLYESKVSKEVQNKRLKRKARAEDGDGQKNERRNRKKVSLSNFSSIYSRSRKSLDEVYDAGLGSSGHDSKKALKSESRDKLNSSSEFNEVPLILDENVMHIPKRKRGGFVRRKKSLDGQILKPSGQLDAKAGSLDDKAGIVDQIAKSSVKDSSDQVECCKTNRKLAFKDLKEKEQKELSSAQHLKKEDGQADQLTRENELNPASCLKEEGEHIDHSVVKPVSPSSKKSQKNVRKRKISGSRSKSNSKEEDDEENLEENAARMLSSRFDPNCTGFSSNTKGSLPPTNGLSFLLSSGHDNVSRIFKPAWVLNRRIKVFWPLDQIWYYGLVNDYDKERKLHHVKYDDRDEEWIDLQNERFKLLLLPSEVPGREERRKSAVGNDLANEKGRSRSRKGKETDAVILEDDCNTSSYMDSEPIISWLARSTNRNKSSPSHNSKRQKTSSLSSKSGSQANENPANLLVKSSGLAERLADVDGQEKSASETTTCSTTRKLPIVYFRKRFRNIGTEIPHKRETDFASRRTHASLAFSFSNVEIDDVEEPDISPRRSEAHRLLWCVDDAGLLQLAIPLMEVGQLRFELSIPEYSFWNVTSSAETFWLFHLAMLIQHGTLTLLWPKVQLEMLFVDNVVGLRFLLFEGCLMQAVAFIFLVLKLFQSPGKQGRYADFQFPITSIRFKFSCLQDIGKQLVFAFYNFSELKNSKWVHLDRLKKYCLISKQLPLTECTYDNIKKLQNSKTQFRASPFCGRSSSVKGTQKISSLGINLKGAACLLMERCVAHLSLQHHDSIEHQENYGRLTVDDMLTDDCANSLSTSSKASDRWNSCPQSDLGTGISDCEDGDGVQSSQYKRSTPVAPTCAGSQDTDKASNDVKRRIRPAGKNISGKTMPLPKVARSDKDSFLNDLSVEIPSFQPLDGELHGPQQSMDVGWNGNAGVIPSPNPTAPRSTWHRNKNNSTSLGLASHGWSDGKSSFINGLGNRTKKPRTQVSYSLPFGGFDYSSKSRNSHPKAIPSKRIRRASEKRSDVARGSKRNLELLSCDANVLITLGDRGWRECGARVVLEVFDHNEWKLAVKLSGITKYSYKAHQFLQPGSTNRYTHAMMWKGGKDWILEFPDRSQWAIFKELHEECYNRNIRAASVKNIPIPGVCLLEENDEYVAEIAYMRNPSKYFRQVETDVEMALNPARVLYDMDSDDEQWIKDIRTSSEVGSNSGLGEVSSEVFEKTVDAFEKAAYSQQRVEFTDDEIAEVMNETLLSGLTKAIFEYWQQKRRRKGMPLIRHLQPPLWETYQQQLKDWECTINKSNTSFCNGYHEKAASVEKPPMFAFCLKPRGLEVFNKGSKQRSHRKFSVSGHSNSIAYDHEGLHGFGRRLNGFSLGDDKMAYIGHNYEFLEDSPLIHTSSSLFSPRLEGGILSNDGLERNFLPKLHKSKSRKYGAWASPYDSGMASFNQRMIGKRDGLNRWNNGYSEWSSPRRYPFDGSQRQILEQLEGSDVDEFRLRDASGAAQHARNMAKLKREKARRLLYRADLAIHKAVVAIMTAEAMKAASEDDSNGDG 1570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2980878 2987862 - MELO3C003664.2.1 Cme04g00376 324637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00376 1570 Gene3D - 329 379 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 856 882 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 1017 1043 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 82 109 - -
Cme04g00376 1570 PANTHER OS01G0179500 PROTEIN 2 1570 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 92 106 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 1 65 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 852 886 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 391 418 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 446 478 - -
Cme04g00376 1570 Coils Coil 268 288 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 233 280 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 196 220 - -
Cme04g00376 1570 Pfam Enhancer of polycomb-like 1153 1246 IPR019542 -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 9 61 - -
Cme04g00376 1570 MobiDBLite consensus disorder prediction 196 217 - -
Cme04g00376 1570 PANTHER PHD FINGER PROTEINS 2 1570 - -
Cme04g00376 1570 SMART TUDOR_7 328 386 IPR002999 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00376 - - - csv:101216141 2875.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01163 Cme-Chr3:21111806 Cme04g00376 Cme-Chr4:2980878 8.01E-42 dispersed
Cme04g00376 Cme-Chr4:2980878 Cme12g00711 Cme-Chr12:12914121 7.76E-06 dispersed
Cme04g00376 Cme-Chr4:2980878 Cme03g01581 Cme-Chr3:24826610 3.73E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g379 Blo01g01361 . Bda01g00721 Bda03g00052 . . Bma04g00052 Bma01g02149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00336 . . . . . . Bpe04g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00376
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004344 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00376 Cme_Chr04 FPKM 323.05072 338.133911 331.989319 339.278381 380.843292 407.020294 372.60144 428.981201 450.250092 413.495239