Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00377 ATGGTCGGTGGTGGAAGCAGGAGGGACGAGGGTTCTTTGGTTATCAACAACACCAATGTTTTTGCAGCCCTTGAGACTCTTAGGAAGAAGAAGAAGTCTGACAAGGAACGCAAGAATAAAGGGTCATCTAAGTCTCAGTCGTCCCAGCCTAAGGAACCTGAACCTCAAGTTTTTTGGGCACCAGCTCCATTAACTTCAAAATCATGGGCTGATGTCGATGATGAAGATGATGACGATTACTATGCCACCACTGCTCCGCCCCAGGCTGTGTGGGGCTCCTCGGAGGCTCATGAGAGCAAGGAGAGGCCGAGCAATGCAGAGGAGAGTGAGAGTGATGATGACATTCTCGATGAAGTTGATTATGAGCTTGAGGATGAACACGAACATGAGCATGAGCATGAGCATGAGCATGAACCAGAGGTTCCTGTGCATCCTGAGCCATCTGTGAAGAAGGTTCCTGAAGCCTCTGTGGCACCAAAGGAGGCTGAGAGGCAACTTTCCAAGAAGGAAAGGAAGAAGAAGGAACTTGCTGAACTTGATGCACTTCTGGCTGATTTTGGAGTAAGCCAGAAAGACAGCAACAGTCAAGACGAGTCTCGTGATGTGCAAGAAAAGAGAGATGGAGAATCCAATGGAGATGGGGAGAAGAAGGAAAATGCCCCTTCAGAGTCCAAAAGTGCCAAGAAGAAGAAGAAGAAGGAAAAGAAGGAGATCAAAGATCAGGATCAGAAAAACAATTCTGATGTTAACACTGGGCCAGATGAACTTACTGGAAATGGTGATGTGGAGGAAGATACATCAGCAGTTGATGTGAAGGAGCGGCTTAAAAAGGTGACGTCTATGAAGAAGAAGAAATCTAACAAAGAGATGGACTCAGCTGCCAAAGCTGCCGCCGTTGAGGCTGCAGCGAGGAGTGCAAGACTTGCAGCTGCAAAAAAGAAAGATAAGAACCATTACAACCAACAGCCTGTGCGGTAA 978 47.24 MVGGGSRRDEGSLVINNTNVFAALETLRKKKKSDKERKNKGSSKSQSSQPKEPEPQVFWAPAPLTSKSWADVDDEDDDDYYATTAPPQAVWGSSEAHESKERPSNAEESESDDDILDEVDYELEDEHEHEHEHEHEHEPEVPVHPEPSVKKVPEASVAPKEAERQLSKKERKKKELAELDALLADFGVSQKDSNSQDESRDVQEKRDGESNGDGEKKENAPSESKSAKKKKKKEKKEIKDQDQKNNSDVNTGPDELTGNGDVEEDTSAVDVKERLKKVTSMKKKKSNKEMDSAAKAAAVEAAARSARLAAAKKKDKNHYNQQPVR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2996935 3000066 + MELO3C003665.2.1 Cme04g00377 324638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00377 325 Coils Coil 162 182 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 110 125 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 305 325 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 156 180 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 194 227 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 95 109 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 26 42 - -
Cme04g00377 325 PANTHER EXPRESSED PROTEIN 1 325 - -
Cme04g00377 325 Coils Coil 224 244 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 126 147 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 307 325 - -
Cme04g00377 325 PANTHER EXPRESSED PROTEIN 1 325 - -
Cme04g00377 325 MobiDBLite consensus disorder prediction 26 291 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00377 - - - csv:101203299 406.371
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g376 Blo01g01362 . Bda01g00722 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1738 . . . . Chy04g00337 . . . . . . Bpe04g00040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00377
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004345 2 1 1 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00377 Cme_Chr04 FPKM 28.446079 19.229414 35.945576 28.180029 17.171356 12.270885 27.966866 20.693079 30.727358 36.313244