Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00378 ATGAATGTGAAACTTGATTCTTCTTTCTTGGGGACTCAACTTCATAGCTCATTGCATTGTGTAACGAATGGAAAATTTGTATATTTGGGTCGACGCCGATTGTCGAAAGGGGACTCTAAGAAGTATGTATGTGCAAAACATAACGAATGGAATGCTCGAGTAGAGAGGTTTTCGCGTTTTTTTGGGCAGCATTTGAAGTCATTGAGCATAAAGCTTAAGCCAAGACACGAGTCTTTGATGAAATGTGCCAATGAGCCTTTTGTTCAAACAAAATCTCTATCAAGTTTACTACGTCCTGTCTGGAATGAGGGGTTGTTTTTGATTAGATGTTCTGCATTCGCTGCTGTTGTATCTGGTATATGCTTACTGGTTTGGTATGGGCAGACAAAAGCCAAGGGCTTTGTTGAAGCTAAGCTTCTTCCTTCTGTTTGCAAAGCAGTCAGTGACTGCATTCAGCGTGATCTTGATTTTGGAAAGGTTAGAAGTATTTCACCCTTGAGCATCACATTAGAGTCGTGTTCCGTTGGTCCCGATGGTGAAGAATTCTCTTGCGGCGAAGTTCCCACCATGAAACTTCGTGTTTTACCTTTCACCAGTTTGAGGAGAGGGAGGGTAATAATTGATGTGGTATTGTCTCATCCAAGTGTGGTAGTTGTGCAGAAGAGGGATTATACGTGGTTGGGGCTGCCCTTTCCATCTGAAGGGACCTTGGAGAGGCATTCATCTTCAGAAGAAGGCATTGACAATCGTACAAAAATCAGGAGAATTGCCAGGGAAAATGCAGCTGCTCTCTGGTCCAAGGATAGGGATGATGCGGCTAGGGAAGCAGCTGAGATGGGTTTTGTTGTTTTTGACAGGAGCTCAGGTTTGTATGATACTAGTGATTATAAGGAGGTTGTAGGTCCTACAGTAGATATTGGAAACTCTAAAACATTTTTTTTCAAGGATGAGAATGTTCATTCGAGGGAACATCACTGCATGGATACGGATGTGGACTATAAAATAAGGCATGCAAAGTCAGAGAAGTATTTTGATGTAAAAAGCCCTGATACAAGGCTTAAATTTTCATCCAGAGCAATGAAAACGCTTATAAAAGGACAATCAAAGAGGAATGCAAGTGGAGACGATGTGTATGTAAATAGTTTTGCTGCAAAAAAGAGAATTCTTAGGCGTAGTACATTGGCAGCTCAGGATTATTTCAAGGGTGCATCTGAGGGGAAGTTTGGGGAGCCTTCACAATTACACAAGAGTTTTAATAATGCGAACCTTGACTCCTACTTGATCAAAAGTGGGAATGAAACTAATGCTGACTCCTCCATCACGGATACAGATGTCCAGTATGGGAAACAAAGTTTAGATGCCAGATTGAATTCTCTTAAAGAGAAAAGGGATATCGATATTCCGAACCATATAGATGATCAGACTTCTACAGTTACAGGCTTGGGAAATAAAGACAGAAGGTCTTTTTCAGCTACACCCAGCATTGATGAGTCCAATATGAGAAAGGAAGATGTTATAGGATCTGATCATGTTCCTGATGGAATATCTGATCACATGCGTAACACATCTCAAACACCAACTTCAACAGGTCATGAACATCAGCATGGAACATCTTGGCCAAATTCTTTCTGGGGACTAAGCCCAGAATCGGCTTTATCTTATTTTCCTAAAGATGTGGCCAAGAAGCTGTTGTACCATATTAGCATGTACGTTCAAAATCTCAAATCTGGCTTTGTTCAACACGCTAGAGGTGTCATAGATGGTGGAGATGTGATGAAGAATAAAGGAACCAATACAATGCTTCCAGTAACGATTGATTCTGTTCATTTCAAAGGCGGGACACTTATGTTACTTGCATACGGTGACAGAGAACCAAGAGAGATGGAGAATGTTAATGGGCATGTGAAATTTCAAAATCATTATGGCAACGTGCACGTTCATTTGAGTGGTAATTGTAAGTCATGGAGATCAGAATTTGTCTCTGGAGATGGTGGCTGGTTATCTGCGGATGTTTTTGTTGACATCTTCGAGCAGGAATGGCATTCAAATCTGAAAATTACCAACATATTTGTTCCGCTTTTTGAGAGAATTTTAGATATTCCAATCACGTGGTCCAAAGGAAGAGCCACTGGTGAGGTTCACTTGTGTATGTCAAGAGGAGATACATTTCCTAATTTTCAAGGGCAACTTGATGTGACCGGTTTAGCCTTTAAGATCTTTGATGCCCCATCAAGCTTTACTGAAATAGCGGCAACTTTATGTTTCCGTGGTCAGAGAATATTTGTACAGAATGCAAGTGGCTGGTTTGGCTGCGCTCCATTAGAGGCATCTGGTGACTTTGGCATTAATCCGGATGAAGGAGAGTTTCATTTGATGTGTCAGGTTCCCGGTGTTGAAGTAAATGCCCTGATGAAAACTTTCAAGATGAAACCTTTCTTATTCCCATTAGCTGGTTCGGTAACTGCTGTGTTCAACTGTCAAGGTCCACTGGATTCACCCATCTTTGTAGGAAGTGGAATGGTTTCCAGGAAGATGAATAATTTATTCTCGGATCTTCCTGCATCCTGTGCTTCAGAAGCAATTGTGAAAAGTAAAGAAGGTGGTGCAATAGCAGCAGTTGACCGTATTCCATTTTCCTATGTCTCAGCAAATTTCACTTTCAGCATCGACAATTGTGTTGCTGACTTATATGGAATTAGAGCCAACCTTGTGGATGGTGGTGAAATTCGAGGCGCCGGGAATGCATGGATATGCCCAGAGGGTGAGCTGGATGATACGGCAATGGATTTAAATTTTTCAGGAAATATATCATTGGATAAAATCATGCATCGATATATGCCTGGCTATTCAGATTGGATGCCACTTAAATTGGGACTTCTAAATGGGGAAACCAAAGTTTCCGGATCCCTCTTGAGACCGAGGTTTAACATTAATTGGACTGCACCACTTGCTGAAGGATCGTTCAGGGATGCTCGAGGAGATATCAATATTTCCCACGATTATATTATTGTTAATTCCTCCTCTGTTGCTTTTGAACTCTTCTCAAAAGTGCAAACATCGTATTCTGACAAGATTATGCTTGATGAAGAAGTGTTTGATACAAAGAGGACTCCATCATTTACTATTGATGGAGTGGAGTTGGACTTACATATGCGTGGTTTTGAGTTCTTGAGCTTAGTCTCTTATATTTTTGAATCTCCAAGGCCTATGCATCTAAAAGCAACCGGAAGGGTTAAGTTTGTGGGGAAAGTTTTGAGACCATCTAGTAAAGATTTTAGTAATGAGAAGAGTAAGCATCAGGTGCAGCCAATTGATGAAGAGAATAAAAATGGTCTTGCTGGCGAGGTTTCAATTTCTGGTCTTAAGCTGAATCAATTGGTTCTGGCCCCTAAGCTTGCTGGGCTATTGAGCATGACTCGTGAGTCAATCAAGTTGGATACCACAGGTAGGCCAGATGAAAGTCTTTCAGTAGAAATTGTGGGGTCATTGAAGCCTAACTCAGATAATTCTAGAAAGTCGAAGTTGTTCTCTTTTAATCTTCAACGGGGGCAATTAAGAGCCAATGCACGTTACCAACCATCTAGATCTGCACATTTGGAGTTACGTCATTTGCCGCTAGATGACTTGGAGCTGGCTTCACTTAGGGGAGCAATACAAAGGGCAGAAATTGAACTTAATCTTCAGAAAAGAAGAGGTCATGGGGTTTTATCAGTACTTGACCCAAAATTTAGCGGCGTGTTGGGAGAAGCTTTAGATATAGCTGCTAGGTGGAGCGGAGACGTGATCACCATCGAGAAAACTATTCTAGAGCAAAGCAATAGCCGTTATGAGCTTCAAGGTGAATATGTGCTTCCTGGAAGCCGTGATCGAAATGTTACCGATAAGGAAAGTACTGGATTTTTGAAAAAGGCAATGGCTTCCCATCTGAGCAGTGTCATATCCTCCATGGGAAGATGGAGGATGAGACTGGAAGTTCCTAGGGCTGAGGTTGCTGAGATGCTTCCACTGGCCCGCCTTCTATCGCGAAGTGCAGATCCTTCAGTTCACTCAAGATCCAAGGATCTTTTTATACAAAATTTGCAAGCTGTTGGATTATACACCGAAAGTGTTCAAGATCTGATTGAGGTGATACGGAGACAATTTATTCTATCAGATGAAATTGTTCTTGAAGATTTATCTCTTCCAGGCTTATCTGAACTCAGAGGCTGCTGGCGAGGCTCTCTTGATGCAAGTGGTGGAGGCAATGGGGATACAATGGCGGAGTTTGACTTCCATGGAGAGGACTGGGAGTGGGGAGTCTACAAAACGCAGCGTGTTTTGGCTGTTGGTGCATACAGCAACAATGATGGTCTGCGGCTGGAAAAAATTTTTATCCAGAAGGATAATGCCACAGTGCATGCAGATGGAACTTTGTTTGGCCCAATAACTAATCTTCACTTTGCTGTTCTAAACTTTCCTGTCAGTCTAGTTCCTGCTGCGGTTCAGGTAATTGAATCTTCAGCAAAAGATCTTGTTCACTCATTGAGGCAACTTGTAGCTCCTATTAGAGGTATACTGCACATGGAGGGAGATCTCAGAGGCAATCTTGCAAAACCAGAATGTGATGTGCAAGTAAGGCTCCTTGATGGTGCCATTGGTGGTGTTGATCTCGGTCGTGCTGAAGTTGTTGCTTCTCTTACCTCAGGCAGCCGTTTTTTGTTCAATGCAAAATTTGAACCAATTATCCAAAATGGCCATGTACATGTTCAAGGAAGCATTCCTGTGATGTTTGTCCAAAATAATATGGGAGAGGTGGAAGAAGTGGAAACAGATACAAGTAGGGGAACTTTGGTTCATGCTTGGGGGAAGGAAAAGGTACGGGAGAAGTTCAATGACAGAAAAAGTTCTAGAGATAGAAATGAAGAAGGTTGGAATACTCAATTGGCTGAAGGGCTTAAAGGATTAAACTGGAGTCTTTTGGATGTAGGAGAAGTTAGGATTGATGCAGATATTAAAGATGGAGGTATGTTGCTACTTACAGCTTTGTCTCCTCATGTCAACTGGCTTCATGGAAATGCTGACATCTTACTTCAGGTTAGAGGGACCATTGAGGAACCAATACTCGACGGATCCGCATCTTTCCACAGGGCTTCAATATCTTCTCCTGTGCTCCCTAAACCACTCACCAACTTCGGTGGTACACTCCATGTAAGATCAAATAGGCTTTGCATCAATTCCTTGGAAAGTCGTGTAAGCCGAAGAGGGAAGTTGATTCTGAAAGGGAATCTGCCCCTTAGATCCAGTGAAGCATGCCTCGATGACAAGATTGATTTAAAATGTGAAGTTCTGGAAGTACGAGCAAAGAATATTTTCAGTGGCCAAGTTGACTCTCAAATGCAAATTACTGGGTCGATATTGCAACCGAACATCTCTGGAAATATTCAATTGAGTCGTGGAGAAGCATATCTACCACATGATAAGGGTAGTGGAGCTGCTTCATTTAATAAAGTGGTATCAGACCAGTTCAGTCTTCCTCCTGGCAGTTCGAACCAAGTAGTTGCTTCTAAATATGCTTCGTTTTTCAATTCGGAATCTACAGCATTGAAAACTAGATTCCGTGTACCCCGAGATAAAGCTGTTGACATTGAAAAGGAGTCCAGAAATGTAAACGTCAAACCTAGTGTTGACGTCAGCCTCAGTGATTTGAAGCTTGTTCTTGGACCAGAATTAAGGATTCTTTATCCTTTGATTCTAAATTTTGCTGTTAGTGGAGAGCTTGAGCTTAACGGTTTTGCTCACGCTAAAAGCATTAAACCAAAAGGAACTTTAACTTTCGATAATGGTGACGTGAATCTTCTTGCGACCCAGGTAAGACTGAAACGGGAGCATCTAAATATAGCAACTTTCGAACCTGAGAATGGGTTAGATCCTATGCTAGATTTAGCTTTAGTAGGTTCCGAGTGGCAGATAAGAATACAAAGTCGGGCAAGCAAATGGCAAGAAAAATTAGTGGTGACGTCAACCCGTTCTGTGGAACAAGATGCTCTCTCACCCACTGAGATGCCAAGTGTGGAGAGTTCGGGGAAAACACTACAGGCTGACTTGACAAGTAGAAAACCTGAACTACGGGCTACTCGGGCATTTGAGAACCAATTGGCAGAATCAATATTGGAGTCAGGTGGGCAATTAGCCTTGGAGAAGCTTGCAACTGCTACGCTCGAGAAACTAATGCCTAGAATAGAAGGAAAGGGTGAATTTGGTCAGGCTAGGTGGAGACTAGTGTATGCTCCACAAATCCCAACTTTACTCTCCTTTCCAACTACTGATCCTCTCCTATCGCTCACCAGTAATATCTCAATTGGTACTGTTGTTGAAGTCCAGCTTGGAAAGCGCATTCAGGAGGTTTTCAAAAATTTCAAACAGGCCTCCATGATTCGCCAAATGAAGGAGACAGAGATGGCCATGCAATGGATGATCACGTACAAGCTTACGAGCCGCTTGCGGATGGTCCTTCAATCAGCTCCAGCTCAACGGACACTTTTGCTCGTTGAGTATTCTGCTACATCACTGGATTAA 6555 42.26 MNVKLDSSFLGTQLHSSLHCVTNGKFVYLGRRRLSKGDSKKYVCAKHNEWNARVERFSRFFGQHLKSLSIKLKPRHESLMKCANEPFVQTKSLSSLLRPVWNEGLFLIRCSAFAAVVSGICLLVWYGQTKAKGFVEAKLLPSVCKAVSDCIQRDLDFGKVRSISPLSITLESCSVGPDGEEFSCGEVPTMKLRVLPFTSLRRGRVIIDVVLSHPSVVVVQKRDYTWLGLPFPSEGTLERHSSSEEGIDNRTKIRRIARENAAALWSKDRDDAAREAAEMGFVVFDRSSGLYDTSDYKEVVGPTVDIGNSKTFFFKDENVHSREHHCMDTDVDYKIRHAKSEKYFDVKSPDTRLKFSSRAMKTLIKGQSKRNASGDDVYVNSFAAKKRILRRSTLAAQDYFKGASEGKFGEPSQLHKSFNNANLDSYLIKSGNETNADSSITDTDVQYGKQSLDARLNSLKEKRDIDIPNHIDDQTSTVTGLGNKDRRSFSATPSIDESNMRKEDVIGSDHVPDGISDHMRNTSQTPTSTGHEHQHGTSWPNSFWGLSPESALSYFPKDVAKKLLYHISMYVQNLKSGFVQHARGVIDGGDVMKNKGTNTMLPVTIDSVHFKGGTLMLLAYGDREPREMENVNGHVKFQNHYGNVHVHLSGNCKSWRSEFVSGDGGWLSADVFVDIFEQEWHSNLKITNIFVPLFERILDIPITWSKGRATGEVHLCMSRGDTFPNFQGQLDVTGLAFKIFDAPSSFTEIAATLCFRGQRIFVQNASGWFGCAPLEASGDFGINPDEGEFHLMCQVPGVEVNALMKTFKMKPFLFPLAGSVTAVFNCQGPLDSPIFVGSGMVSRKMNNLFSDLPASCASEAIVKSKEGGAIAAVDRIPFSYVSANFTFSIDNCVADLYGIRANLVDGGEIRGAGNAWICPEGELDDTAMDLNFSGNISLDKIMHRYMPGYSDWMPLKLGLLNGETKVSGSLLRPRFNINWTAPLAEGSFRDARGDINISHDYIIVNSSSVAFELFSKVQTSYSDKIMLDEEVFDTKRTPSFTIDGVELDLHMRGFEFLSLVSYIFESPRPMHLKATGRVKFVGKVLRPSSKDFSNEKSKHQVQPIDEENKNGLAGEVSISGLKLNQLVLAPKLAGLLSMTRESIKLDTTGRPDESLSVEIVGSLKPNSDNSRKSKLFSFNLQRGQLRANARYQPSRSAHLELRHLPLDDLELASLRGAIQRAEIELNLQKRRGHGVLSVLDPKFSGVLGEALDIAARWSGDVITIEKTILEQSNSRYELQGEYVLPGSRDRNVTDKESTGFLKKAMASHLSSVISSMGRWRMRLEVPRAEVAEMLPLARLLSRSADPSVHSRSKDLFIQNLQAVGLYTESVQDLIEVIRRQFILSDEIVLEDLSLPGLSELRGCWRGSLDASGGGNGDTMAEFDFHGEDWEWGVYKTQRVLAVGAYSNNDGLRLEKIFIQKDNATVHADGTLFGPITNLHFAVLNFPVSLVPAAVQVIESSAKDLVHSLRQLVAPIRGILHMEGDLRGNLAKPECDVQVRLLDGAIGGVDLGRAEVVASLTSGSRFLFNAKFEPIIQNGHVHVQGSIPVMFVQNNMGEVEEVETDTSRGTLVHAWGKEKVREKFNDRKSSRDRNEEGWNTQLAEGLKGLNWSLLDVGEVRIDADIKDGGMLLLTALSPHVNWLHGNADILLQVRGTIEEPILDGSASFHRASISSPVLPKPLTNFGGTLHVRSNRLCINSLESRVSRRGKLILKGNLPLRSSEACLDDKIDLKCEVLEVRAKNIFSGQVDSQMQITGSILQPNISGNIQLSRGEAYLPHDKGSGAASFNKVVSDQFSLPPGSSNQVVASKYASFFNSESTALKTRFRVPRDKAVDIEKESRNVNVKPSVDVSLSDLKLVLGPELRILYPLILNFAVSGELELNGFAHAKSIKPKGTLTFDNGDVNLLATQVRLKREHLNIATFEPENGLDPMLDLALVGSEWQIRIQSRASKWQEKLVVTSTRSVEQDALSPTEMPSVESSGKTLQADLTSRKPELRATRAFENQLAESILESGGQLALEKLATATLEKLMPRIEGKGEFGQARWRLVYAPQIPTLLSFPTTDPLLSLTSNISIGTVVEVQLGKRIQEVFKNFKQASMIRQMKETEMAMQWMITYKLTSRLRMVLQSAPAQRTLLLVEYSATSLD 2184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3002735 3036677 + MELO3C003666.2.1 Cme04g00378 324639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00378 2184 MobiDBLite consensus disorder prediction 517 537 - -
Cme04g00378 2184 MobiDBLite consensus disorder prediction 471 496 - -
Cme04g00378 2184 MobiDBLite consensus disorder prediction 513 537 - -
Cme04g00378 2184 MobiDBLite consensus disorder prediction 467 501 - -
Cme04g00378 2184 Pfam TamB, inner membrane protein subunit of TAM complex 1740 2162 IPR007452 GO:0005887|GO:0009306
Cme04g00378 2184 PANTHER EMBRYO DEFECTIVE 2410 1 2182 - -
Cme04g00378 2184 Coils Coil 1211 1231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00378 - - - csv:101203544 4106.98
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g375 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00338 . . . . . . Bpe04g00041 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00378
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007054 1 2 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00378 Cme_Chr04 FPKM 93.702454 96.715134 39.45985 40.891716 78.341415 75.28334 77.594597 64.661919 68.392845 59.52261