Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00380 ATGCAAAGTAGTCAATTGGACCCTATAACAAACAAAATGGAATCTTCACTGTCAGAAGCTCCTAGAGGGGTTGCTGTTTCTTCCTCGGATCCTTCCGTGCATCAATATTTAGTACCCAACAGGCAGATGGAACTGATGGAATCAATTTCCGGTAGCTCTCTAACTCAGAGTGGAATGCTATCACACATGCAAAGAGGACAGGTTGATGTTAAAACTGGCAATTTTGGACGGCAACACTTTCAAATACCCGACAATCAATTTGGAGGGACTGGAAACATGGTGAGAACTGCAGAAGGGATGCTATCACTTCCCGTGAAGCGCAAAGCATCAAATGAGCCTTTGAACTCTCTCGCACAGCAGTCTCCATTGCATAATAAGCGTGTTGCACCCATGGAACATCGACCATGGTTGCAGCCAGCTTCTGGAATAGCCAAAAGACCTCATTTACAAATACCAAACAATTCCCCAGCTCCTGCTCCAATGCATTCCCCTGCAGGAACTAAAAGAAAGGTACAGCAAATGGAATCACATCCAACTAAAGTTGGACATCAACGATCAAATTCTTCCAAAGGCCAGACTGCTCCGCCCACTCCAACTTCCAAAATACAAAATGAACCAACTGGGTCTGTGAGATCGAAGATGAGGGAATCCTTGACTGCGGCATTAGCCTTGGTGTCACAGCAGGAAGACAAGTCATCAAATGACGAAAAAAGTCCTCGGACAGAGGCTGAAAAGTCTGCAGCTCCAAAGCAGGAAAAATCTTTATCATCTGGTCCAGCTATTGGTCATGTATCTGATGACTCGAAGAAAATTTTTTCTGAAAAATTAGATTCTGTTGGTCTTGAAGACAATGTAGGAAAGATGTTAGATAAGAGTTCGCTATGTGTAAATGTTAGTGATTTAGATGCATTGAGATATGATGGGCGAGTCTTTCAACCAAATAATGTTTTGTCGTATGAAGATATTTCTTTTGGGGACAACTTTTTTATTAAAGATGATCTTTTACAAGAAAATGGTCTCTCGTGGGTACTGGAGGCTGATTTAGGCGTAGCTGATAAAAAGGAAACTTTAACTGATGAACTTCAGAAGATAGATGTTGGTATAGGAAATCAAAACCAGGGAGCAAAACCAGTTCAGACACCCGAGTCTTTAGCTGTGAAAATTGAAGAAGAATTATTTAAATTATTTAGTGGTGTTAATAAAAAGTACAAGGAAAAAGGAAGGTCCCTTTTGTTCAACCTGAAAGACAGAAATAATCCTGAATTGAGAGAAAGGGTTATGAGTGGGGAAATTACCCCGGAAAGATTGTGCTCGATGACTGCTGAGGAACTTGCTTCCAAGGAGCTTTCTGAGTGGAGAATGGCGAAGGCTGAAGAATTTGCACAAATGGTGGTTTTACCGGACACTGAAGTTGATATCAGGCGTTTGGTAAAGAAGACACATAAAGGTGAATTCCAGGTAGAAGTTGAAGAATACGATAATGCCTCTGCAGATGTTTCATCTGGGGCTTCTACGTTTTCTCAGAGTCAACGCAACAAGAATGAGTCTGAAGATGGGTCACCTGATGAACCCGAAACAGTTAAGGATGAGCAGAACATTTCTGGCCAGAAAAATGCTGCATCTAACAAGGATAATTACACCTTCACAATTGCATCAAATGAAGGGTCTGATTTGATGCAAGGACTCATGGTTGATGACGGTCTGAAGGATACGGAGTTGCTGCCTCCAATCGTCTCCCTAGATGAGTTCATGGAGTCCCTCGATACGGAGCCGCCTTTTGATATTTTAGCTGAAGGTGCTGGAAAATTATCTCCTGTTTCTGAGAAAGGTGAGTCTGAGCCTAACTCTCGGTTGAAGACTGCAGCTCATCCTACCAAAGGTGCTACTGATGTCAGTACAGAAAAGAATAATGAAGAGTTTCATACAAAAGCAGATATTGCGTCATCTTCTATTGGTCACGTGGATTTGCAACCTAGTCCTACTAAACCTGACGTGGATTCTAATGACAACCAAGTTGGTTTAAGAACGTCAGACAGGAACGACGTTGCAAAATCTAATGATAGTAATAATGCAAAATCTGAGACAGAATCTCCTGCTACCGCAGTTAAGTTAGAACATCTATGGGATGGCATTCTCCAGTACAACATTTCGACAATGACTTCTGTCGTGGGTACCTACATAAGTGGCGAAAGGACTTCGGCGAAAGATTGGCCTGGCATTCTTGAGATTAAAGGGAGAGTAAGATTGGATGCGTTTGAGAAGTTCCTTCAAGAGCTTCCATTATCACGGAGTCGTGCCGTTATGGTTCTTCATTTGGATTTGAAGGAGGGACGCCCTGAAAGTGAACGAGCTGATTTACGCGAGGTAGCTGAGTCATATGTTGTGGATGAGCGAGTTGGTATAGCGGAACCTGGATCTGGGGTTGAATTTTATTTTTGCCCACCACATAGAAGAATTCTTGAAATGCTTGGCAGGATCCTTCTAAAGGAAACTTCTAATGAGGCACTTAATGCAATTGAAAATGGCTTAATAGGCGTTGTTGTATGGAGAAAAACTCAATTAACGTCAATGTCACCAAACTCAACATCACACCACAAACGCAGTTCAAAAAAACAACATTTTAGTTCTAGAAGACCACAGGAGACGTCAAACTTTAAAGCTAATAATATTTCCCCTAAACAGACTATGCCTCATGGCTATTTTCCTATTGCCACTGCTCGTCCTCCGCCTGAGGAGGATGATGCCGATGGTGATGATGACGTCCCTCCTGGTTTTGGTCCTTCAACTGCTCGGGATGATGACGATCTCCCTGAATTTAACTTCTCTGGTTCTGCAAACCCTCCTGGGTTCTCTTCGCAGAACAAGCACCCTCTTACCCCTCGAGGGCAGTCCTCGAGACCACCCTCGTTCCAACCATCCCAAACTGGGTCACGTCCAGTAGAGCAAATGCGAGAGCTTGTGCACAAATATGGGCAAAACTTAGGTGGAAACACCCCCTCCACCGTAAACTGGGGAGAAAGGAGTGGGTTCAGTTCGGTAGCCATGCAGCCTTGGAATGACGATGACGACGATATCCCAGAATGGCAACCGCAAGCAGCTGCGGCCTCACATCAGCAAATACCTCCTCCCTCACATTCGCAACAACCCGTACGTGGGTTTCAGCAGCCGACGATAAGGCCTCAGTACATGATGAACCATAATCAACAGCCCATGGGGCACCCCCCGCCCTTAAATGTGAGTCAACAAGGGACATGGTGGGCTCCTCAGCAAGGCCATAACATCAACAACAGCAATAATTTACAGCCTATTAGCAATTTAAATAGTAGTAGTGGTCAGTTTTATGGGTCATTTGGAAGATCAGCTCCTTCGAACCCTTCCAATAATAGAGGGTTTTGA 3396 43.76 MQSSQLDPITNKMESSLSEAPRGVAVSSSDPSVHQYLVPNRQMELMESISGSSLTQSGMLSHMQRGQVDVKTGNFGRQHFQIPDNQFGGTGNMVRTAEGMLSLPVKRKASNEPLNSLAQQSPLHNKRVAPMEHRPWLQPASGIAKRPHLQIPNNSPAPAPMHSPAGTKRKVQQMESHPTKVGHQRSNSSKGQTAPPTPTSKIQNEPTGSVRSKMRESLTAALALVSQQEDKSSNDEKSPRTEAEKSAAPKQEKSLSSGPAIGHVSDDSKKIFSEKLDSVGLEDNVGKMLDKSSLCVNVSDLDALRYDGRVFQPNNVLSYEDISFGDNFFIKDDLLQENGLSWVLEADLGVADKKETLTDELQKIDVGIGNQNQGAKPVQTPESLAVKIEEELFKLFSGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEITPERLCSMTAEELASKELSEWRMAKAEEFAQMVVLPDTEVDIRRLVKKTHKGEFQVEVEEYDNASADVSSGASTFSQSQRNKNESEDGSPDEPETVKDEQNISGQKNAASNKDNYTFTIASNEGSDLMQGLMVDDGLKDTELLPPIVSLDEFMESLDTEPPFDILAEGAGKLSPVSEKGESEPNSRLKTAAHPTKGATDVSTEKNNEEFHTKADIASSSIGHVDLQPSPTKPDVDSNDNQVGLRTSDRNDVAKSNDSNNAKSETESPATAVKLEHLWDGILQYNISTMTSVVGTYISGERTSAKDWPGILEIKGRVRLDAFEKFLQELPLSRSRAVMVLHLDLKEGRPESERADLREVAESYVVDERVGIAEPGSGVEFYFCPPHRRILEMLGRILLKETSNEALNAIENGLIGVVVWRKTQLTSMSPNSTSHHKRSSKKQHFSSRRPQETSNFKANNISPKQTMPHGYFPIATARPPPEEDDADGDDDVPPGFGPSTARDDDDLPEFNFSGSANPPGFSSQNKHPLTPRGQSSRPPSFQPSQTGSRPVEQMRELVHKYGQNLGGNTPSTVNWGERSGFSSVAMQPWNDDDDDIPEWQPQAAAASHQQIPPPSHSQQPVRGFQQPTIRPQYMMNHNQQPMGHPPPLNVSQQGTWWAPQQGHNINNSNNLQPISNLNSSSGQFYGSFGRSAPSNPSNNRGF 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3048691 3055228 - MELO3C003671.2.1 Cme04g00380 324641

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00380 1131 MobiDBLite consensus disorder prediction 1087 1131 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 878 895 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 1032 1052 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 600 698 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 944 979 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 230 249 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 494 540 - -
Cme04g00380 1131 Gene3D - 354 447 IPR036575 GO:0006351
Cme04g00380 1131 ProSiteProfiles TFIIS central domain profile. 349 472 IPR003618 GO:0006351
Cme04g00380 1131 SUPERFAMILY Elongation factor TFIIS domain 2 377 448 IPR036575 GO:0006351
Cme04g00380 1131 MobiDBLite consensus disorder prediction 515 530 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 856 979 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 1019 1052 - -
Cme04g00380 1131 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 31 1104 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 169 214 - -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 1 31 - -
Cme04g00380 1131 SMART mid_6 347 455 IPR003618 GO:0006351
Cme04g00380 1131 MobiDBLite consensus disorder prediction 652 697 - -
Cme04g00380 1131 Pfam Transcription factor S-II (TFIIS), central domain 355 459 IPR003618 GO:0006351
Cme04g00380 1131 MobiDBLite consensus disorder prediction 497 514 - -
Cme04g00380 1131 Pfam SPOC domain 701 849 IPR012921 -
Cme04g00380 1131 MobiDBLite consensus disorder prediction 146 266 - -
Cme04g00380 1131 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 31 1104 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00380 - - - csv:101216628 2127.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01004 Cme-Chr3:19083622 Cme04g00380 Cme-Chr4:3048691 1.33E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g372 Blo01g01364 . Bda01g00724 . . . . Bma01g02151 . . . . . . . . . . . . . . . . Cla05g01761 Cam05g1880 Cec05g1890 Cco05g1953 Clacu05g1870 Cmu05g1752 Cre05g1880 . Cone7ag1733 . . . . Chy04g00341 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004122 1 1 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 4 2 1 1 1 1 2 1 1 1 6 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00380 Cme_Chr04 FPKM 9.029505 8.232202 7.879775 7.387079 7.744787 7.473414 7.709079 15.024956 13.40812 14.065573