Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme04g00381 | ATGAGTAGGGAAAATGTTACTTTTCAAGTCGAAGAGCGCTCCAGCAGAATCACGAGAGCACGGGCAAAAGAGCTGAGCGAATCAGGAGGCATCTTATGTTCTTCAAAATCTTCTGGAGTTCAGAAGCATATTCTACGAGCTAACTCAAAAAGAATGGCATCTGATGATATTAAGAGTTGTCCAGGCTCTTCCCATGGCCTTCCTAACAAAAGAAGAGCAGTGCTCAAGGATGTGACTAACATTTCCACCAAATGTTTTGATAAGAATTGCAGAAATGTTTCTAATATTCAGGGTGCCAAAACAACAAGAAAAATTTCTTCAAAAGTTAAGGCAAATGTGCCTTCAAATGCTCCTGAAGAAATTTTAGGTGCAGAAGAAGATGCAAACACAAGACTGGCTGAGGATTTATCTAAAATAAGGGTGGTAGAATATCGAGAGGTCTCTCTAAGAGAGACTTTGGACGAAAAAGAGAGAACAGCGCAAACTAGGAGTCTTACCAGTAGAGAATGTGGAGTTTCAGATATGATTCTCTCTGTGTCTTCAGAAGAATCTATCCCTCAGCCAAATGAAAAATATATGGCACCTCAACGATCGGCAGCATCAAGGGATAGAGGTGTTATAGACATCGATTCAAACTCTAAATGTCTTCAATCATGCAGCACATATGCTCCAGACATATATGACAGGATACGTGTGACAGAGCTTGATCAAAGGGCCTCAACTAACTATATGGAACAGTTGCAGCAAGATATCACTGCAAACATGCGAGGAATACTGGTTGATTGGCTTGTAGAGGTTTCTGAAGAATATAATCTAGTTTCAGATACATTCTATCTCACTGTTAATCTCATCGATCGATTTCTCTCTCAAAATTATATCGAAAAGAAGCGACTACAACTTGTTGGTGTTGCAAGCATGTTAATTGCATCGAAATATGAAGAGATCTGTGCACCGCGAGTGGAAGATTTCTGCTTCATTACAGATAATACTTACACCAAAGGAGAGGTTGTAGAAATGGAGAGTGAAGTTTTGAACATACTGCACTTTCGGCTATCTGTTCCCACTACTAAGACATTTCTAAGGAGATTTATACAATCAGCTCATGCCTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTTTGGCCAATTATTTAGCTGAGTTGACTCTTGTTGAATACAGCTTCCTAAAGTTCCTTCCTTCTCTGATCGCCGCATCCGCCGTATTTCTTGCAAGATGGACACTTGACCAATCGGATCATCCGTGGAATCCAACCCTAGAGCACTATACCAGTTACGACGTTTCTCAGCTGAAGACTGTTGTGCTTGCCCTCCAAGACTTGCAACTTAACACCAGTGCTTCCTCGTTAAATGCCATACGTCAAAAGTATAAACAACCGAAGTTCAAATGCGTAGCTACATTAACGTCTACAAAATCAGTTCTATCACTATTTTGA | 1455 | 40.34 | MSRENVTFQVEERSSRITRARAKELSESGGILCSSKSSGVQKHILRANSKRMASDDIKSCPGSSHGLPNKRRAVLKDVTNISTKCFDKNCRNVSNIQGAKTTRKISSKVKANVPSNAPEEILGAEEDANTRLAEDLSKIRVVEYREVSLRETLDEKERTAQTRSLTSRECGVSDMILSVSSEESIPQPNEKYMAPQRSAASRDRGVIDIDSNSKCLQSCSTYAPDIYDRIRVTELDQRASTNYMEQLQQDITANMRGILVDWLVEVSEEYNLVSDTFYLTVNLIDRFLSQNYIEKKRLQLVGVASMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNILHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEYSFLKFLPSLIAASAVFLARWTLDQSDHPWNPTLEHYTSYDVSQLKTVVLALQDLQLNTSASSLNAIRQKYKQPKFKCVATLTSTKSVLSLF | 484 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3058212 | 3064965 | - | MELO3C003672.2.1 | Cme04g00381 | 324642 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme04g00381 | 484 | PIRSF | Cyclin_A_B_D_E | 32 | 483 | IPR039361 | - | |
| Cme04g00381 | 484 | SUPERFAMILY | Cyclin-like | 353 | 478 | IPR036915 | - | |
| Cme04g00381 | 484 | SMART | cyclin_7 | 358 | 446 | IPR013763 | - | |
| Cme04g00381 | 484 | SMART | cyclin_7 | 261 | 345 | IPR013763 | - | |
| Cme04g00381 | 484 | CDD | CYCLIN | 255 | 344 | IPR013763 | - | |
| Cme04g00381 | 484 | CDD | CYCLIN | 352 | 444 | IPR013763 | - | |
| Cme04g00381 | 484 | SMART | Cyclin_C_2 | 354 | 477 | IPR004367 | - | |
| Cme04g00381 | 484 | Pfam | Cyclin, C-terminal domain | 354 | 476 | IPR004367 | - | |
| Cme04g00381 | 484 | Gene3D | - | 225 | 473 | - | - | |
| Cme04g00381 | 484 | ProSitePatterns | Cyclins signature. | 256 | 287 | IPR006671 | - | |
| Cme04g00381 | 484 | PANTHER | CYCLIN-A2-4 | 50 | 484 | - | - | |
| Cme04g00381 | 484 | PANTHER | CYCLINS | 50 | 484 | IPR039361 | - | |
| Cme04g00381 | 484 | SUPERFAMILY | Cyclin-like | 217 | 351 | IPR036915 | - | |
| Cme04g00381 | 484 | Pfam | Cyclin, N-terminal domain | 225 | 352 | IPR006671 | - | |
| Cme04g00381 | 484 | Gene3D | - | 239 | 352 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g02080 | Cme-Chr3:28205221 | Cme04g00381 | Cme-Chr4:3058212 | 3.54E-100 | dispersed | |
| Cme04g00381 | Cme-Chr4:3058212 | Cme07g00308 | Cme-Chr7:1981391 | 5.19E-99 | dispersed | |
| Cme01g01500 | Cme-Chr1:19726006 | Cme04g00381 | Cme-Chr4:3058212 | 6.29E-54 | transposed | |
| Cme01g02653 | Cme-Chr1:34000856 | Cme04g00381 | Cme-Chr4:3058212 | 1.39E-142 | transposed | |
| Cme03g00509 | Cme-Chr3:7597299 | Cme04g00381 | Cme-Chr4:3058212 | 3.31E-96 | transposed | |
| Cme05g00225 | Cme-Chr5:1579347 | Cme04g00381 | Cme-Chr4:3058212 | 1.50E-38 | transposed | |
| Cme07g00058 | Cme-Chr7:374287 | Cme04g00381 | Cme-Chr4:3058212 | 2.30E-60 | transposed | |
| Cme08g00990 | Cme-Chr8:6469717 | Cme04g00381 | Cme-Chr4:3058212 | 1.37E-62 | transposed | |
| Cme08g01425 | Cme-Chr8:12648898 | Cme04g00381 | Cme-Chr4:3058212 | 7.93E-54 | transposed | |
| Cme03g01666 | Cme-Chr3:25418164 | Cme04g00381 | Cme-Chr4:3058212 | 1.52E-137 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme04g00381 | K06627 | - | csv:101204275 | 908.286 |