Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00382 ATGCCCATTCACAAACCTAGCCTTTTGATATACAGAATCCTCTACGCCATCCAACACAATCATCCTTCTAGTTTTCGATTTTCAGCTCTGCAATTCTCCTCTTTGTCTGCTCATTCATGGCTGTCCATGCCAGGAAAGCCCCTCATAAAGTGGCCTTCATTGCCCGACCAGCCTGCCAATACGTTGCCATCAAATTCTGCCGTCATTTCAAACCCTAACTCTGCCATTGACTTGAAATTCGAAGCAAGTTATGCGCCGAATGACTTGTCTACCATTTCTAGCATCCTTTCCGATCGCACTGTTCGGCCCGGTGCCGCGCTCGAGGATGCTTTGGACCGGACTGGAATCGTGCCGAGTTCGAGTTTGTTGGAAGCTGTGTTCGATCATTTTGATTCGTCTCCTAAGTTCTTGCACTCGCTGTTTCTTTGGGCTGCGAAGAAATCTGGATTTCGCCCCTCTGCAGCATTGTTCAACCGTCTGATCAACGTGCTTGCGAAATCGAGGGAGTTTGATTCTGCTTGGTCTTTGATAACTTCTCGTCTACTTGGAGGTGAAGAGTCCTTTTTGGTTTCGGTGGAGGTTTTGGTGATATTGATCAGGCGGTATGCTCGTGCAGGCATGCTTCAACCTGCTATTCGAACGTATGAATTTGCTTGCAACCTAGAAACAATTTCAGGGACCGGCTCCGAGGGATTGTTTGAGATTTTACTGGATTCACTCTGCAAAGAAGGCCATGTCAGGGTAGCTTCCGAGTATTTCAATAGGAAAAGGGAAATGGGTTCAAGCTTTGAACCGTCAATTCGAGCATATAATATACTTCTAAATGGATGGTTTCGGTCAAGAAAGCTTAAACATGCTCAGAGGCTCTGGTTTGAGATGAAGAAGAACAATATATCTCCCACTGTTGTTACGTATGGCACTCTAATAGAAGGGTACTGTCGAATGCGTAGTGTCGAAATTGCCATTGAATTGGTGGATGAGATGAGGAGGGAAGGTATTGAGCCAAATGCAATCATATATAATCCAATAGTTGATGCACTTGGGGAAGCTGGGAGGTTTAAAGAGGCACTTGGAATGATGGAGCGGTTCATGGTTTTGGAGCAAGGTCCGACTATCTCAACGTACAATTCTCTCATCAAGGGATATTGCAAAGCAGGAGATCTTTCCGGGGCTAGCAAGATCCTTAAGATGATGATTGGTAGAGGATTCACTCCGACCCCGACCACTTATAACTATTTCTTCAGATTCTTCTCTAAATACGGTAAAATTGAGGAGAGTATGAACCTTTACAATAAAATGATTGAATCAGGATATGCGCCAGATAAACTTACATATCACTTGTTGCTGAAGATGTTATGTGAAGAGGAGAGGTTAAACCTTGCAGTTCAAGTTTGCAATGAAATGAAGGCTAGAGGGTTTGACATGGATTTAGCTACAAGCACCATGTTAATGCATTTGCTATGCAAGATGCATAAGTTTGAAGAAGCTTTTGCAGAATTTGAGCACATGATTCATCGAGGAATTGTTCCTCAATATCTTACTTTCTGCAGATTGCACGATGAATTCTTGAAACGTGGATTGACAAAAATGGCATCTAAGCTGCAAGAGATGATGTCTTCGGTTCCTCATTCAGAGAAGTTGCCCGATACCTATAATCAAACTCCTGATTCTGTTCGTGCTAGAAGAACATCTATTATGCGTAAAGCTGAGGCAATGTCTGAAATGTTGAAGGTCTGTAATGACCCTAGAGAGCTTGTCAAACGCAGAAGTCCATCTGAAAATGCTGTATTTAGTGCAAATAAGTTGATAGATGATATCAAGAAGAAGGCCAACCCTGGGACTTTTTAA 1848 43.13 MPIHKPSLLIYRILYAIQHNHPSSFRFSALQFSSLSAHSWLSMPGKPLIKWPSLPDQPANTLPSNSAVISNPNSAIDLKFEASYAPNDLSTISSILSDRTVRPGAALEDALDRTGIVPSSSLLEAVFDHFDSSPKFLHSLFLWAAKKSGFRPSAALFNRLINVLAKSREFDSAWSLITSRLLGGEESFLVSVEVLVILIRRYARAGMLQPAIRTYEFACNLETISGTGSEGLFEILLDSLCKEGHVRVASEYFNRKREMGSSFEPSIRAYNILLNGWFRSRKLKHAQRLWFEMKKNNISPTVVTYGTLIEGYCRMRSVEIAIELVDEMRREGIEPNAIIYNPIVDALGEAGRFKEALGMMERFMVLEQGPTISTYNSLIKGYCKAGDLSGASKILKMMIGRGFTPTPTTYNYFFRFFSKYGKIEESMNLYNKMIESGYAPDKLTYHLLLKMLCEEERLNLAVQVCNEMKARGFDMDLATSTMLMHLLCKMHKFEEAFAEFEHMIHRGIVPQYLTFCRLHDEFLKRGLTKMASKLQEMMSSVPHSEKLPDTYNQTPDSVRARRTSIMRKAEAMSEMLKVCNDPRELVKRRSPSENAVFSANKLIDDIKKKANPGTF 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3073360 3077046 + MELO3C003674.2.1 Cme04g00382 324643

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00382 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Cme04g00382 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Cme04g00382 615 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Cme04g00382 615 TIGRFAM PPR: pentatricopeptide repeat domain 481 510 IPR002885 -
Cme04g00382 615 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Cme04g00382 615 TIGRFAM PPR: pentatricopeptide repeat domain 374 406 IPR002885 -
Cme04g00382 615 TIGRFAM PPR: pentatricopeptide repeat domain 303 337 IPR002885 -
Cme04g00382 615 TIGRFAM PPR: pentatricopeptide repeat domain 444 476 IPR002885 -
Cme04g00382 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cme04g00382 615 Gene3D Tetratricopeptide repeat domain 293 368 IPR011990 GO:0005515
Cme04g00382 615 Gene3D Tetratricopeptide repeat domain 227 292 IPR011990 GO:0005515
Cme04g00382 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Cme04g00382 615 SUPERFAMILY HCP-like 343 507 - -
Cme04g00382 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 476 510 IPR002885 -
Cme04g00382 615 Gene3D Tetratricopeptide repeat domain 379 595 IPR011990 GO:0005515
Cme04g00382 615 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 101 610 - -
Cme04g00382 615 Pfam Pentatricopeptide repeat domain 464 515 IPR002885 -
Cme04g00382 615 PANTHER LEAF PROTEIN-LIKE 101 610 - -
Cme04g00382 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 370 IPR002885 -
Cme04g00382 615 Pfam PPR repeat family 265 314 IPR002885 -
Cme04g00382 615 Pfam PPR repeat family 370 415 IPR002885 -
Cme04g00382 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 441 475 IPR002885 -
Cme04g00382 615 Gene3D Tetratricopeptide repeat domain 132 223 IPR011990 GO:0005515
Cme04g00382 615 Pfam PPR repeat 235 260 IPR002885 -
Cme04g00382 615 Pfam PPR repeat 339 362 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00382 - - - csv:101216859 1162.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01731 Cme04g00382 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00382 Cme-Chr4:3073360 Cme08g01869 Cme-Chr8:22675781 2.24E-65 dispersed
Cme07g00045 Cme-Chr7:280339 Cme04g00382 Cme-Chr4:3073360 1.48E-41 dispersed
Cme04g00382 Cme-Chr4:3073360 Cme01g02021 Cme-Chr1:28794949 1.59E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g320 Blo01g01770 Blo12g00760 Bda01g00727 Bda03g00425 Bpe02g01190 Bpe02g00174 Bma04g00401 . Cmo05g00626 Cmo12g00214 Cma01g01431 . . Car12g00245 Sed01g1279 Cpe07g00225 . Bhi04g00830 Tan02g2575 Cmetu03g2145 . Hepe10g0348 . Lcy13g1393 . . . . . . . . . Cone17ag1114 Cone20ag0607 Lsi04g02339 Csa03g04560 Chy04g00142 Cme03g01731 . Blo18g00073 Bda01g00944 . . Bpe04g00391 Bma01g01338 . . Cmo01g01480 . . Cma12g00261 . Car05g00543 Cpe11g00524 Cpe02g00517 Bhi09g02597 . . . Hepe01g2229 Mch11g0779 . Cla08g01232 Cam08g1690 Cec08g1269 Cco08g1390 Clacu08g1388 . Cre08g1173 Lsi08g01095 . Chy03g01237 Cme04g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002447 1 3 2 2 2 2 2 1 1 2 1 2 2 2 2 2 2 3 2 1 2 2 2 2 2 2 2 4 3 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00382 Cme_Chr04 FPKM 4.447032 3.514229 4.611483 3.899126 3.18776 4.668982 3.313857 5.175914 5.739431 5.388507