Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00385 ATGGCGGCATCATCTCTAAGTTCTTGGTCCCACGCACTCGTCAGAATCTCCCCCTACACCTTCTCCGCCGTCGGCATTGCCATTTCCATCGGCGTTTCTGTCCTCGGAGCCGCCTGGGGAATCTACATAACCGGAAGTAGTCTGATCGGTGCTGCAATTAAAGCTCCACGTATTACCTCGAAAAATTTAATTAGTGTAATTTTCTGTGAAGCTGTGGCTATCTATGGTGTCATTGTGGCCATCATTTTACAAACAAAACTGGAGAGTGTTTCTGCATCTCAAATTTTTACTCCCGAGTCTCTAACAGCAGGATATTCAATTTTTGCCTCTGGGATTATTGTCGGCTTTGCCAACTTGTTTTGCGGGTTATGTGTAGGGATTATTGGAAGCAGCTGTGCATTATCTGATGCCCAAAACTCATCTCTTTTTGTAAAGATTCTTGTGATCGAGATCTTTGGAAGCGCACTCGGATTATTTGGTAAAAACCTTCCCGAATGGTCTCGACATAGCTCTGACACCTCACCTCAAAAAGATGAGGGTCACAAAATAAGGTGTGCTATGGCTGGATGCGCCCTTGGTAAAGCCATAAAGGCCTACAGCCTTGCAACTTCTTAA 615 45.04 MAASSLSSWSHALVRISPYTFSAVGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIFTPESLTAGYSIFASGIIVGFANLFCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGKNLPEWSRHSSDTSPQKDEGHKIRCAMAGCALGKAIKAYSLATS 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3091602 3093967 + MELO3C003677.2.1 Cme04g00385 324646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00385 204 CDD ATP-synt_Vo_c_ATP6F_rpt2 103 160 - -
Cme04g00385 204 CDD ATP-synt_Vo_c_ATP6F_rpt1 21 83 - -
Cme04g00385 204 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 160 - -
Cme04g00385 204 SUPERFAMILY F1F0 ATP synthase subunit C 17 86 IPR035921 -
Cme04g00385 204 Gene3D - 19 161 IPR035921 -
Cme04g00385 204 Pfam ATP synthase subunit C 108 160 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cme04g00385 204 Pfam ATP synthase subunit C 25 83 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cme04g00385 204 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 5 160 - -
Cme04g00385 204 SUPERFAMILY F1F0 ATP synthase subunit C 100 160 IPR035921 -
Cme04g00385 204 PRINTS Vacuolar ATP synthase 16kDa subunit signature 146 169 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme04g00385 204 PRINTS Vacuolar ATP synthase 16kDa subunit signature 63 87 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme04g00385 204 PRINTS Vacuolar ATP synthase 16kDa subunit signature 119 145 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cme04g00385 204 PRINTS Vacuolar ATP synthase 16kDa subunit signature 37 61 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00385 Cme-Chr4:3091602 Cme06g00382 Cme-Chr6:2410531 1.86E-08 dispersed
Cme03g01656 Cme-Chr3:25321473 Cme04g00385 Cme-Chr4:3091602 3.43E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00385 K03661 - csv:101205012 287.73