Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g00385 | ATGGCGGCATCATCTCTAAGTTCTTGGTCCCACGCACTCGTCAGAATCTCCCCCTACACCTTCTCCGCCGTCGGCATTGCCATTTCCATCGGCGTTTCTGTCCTCGGAGCCGCCTGGGGAATCTACATAACCGGAAGTAGTCTGATCGGTGCTGCAATTAAAGCTCCACGTATTACCTCGAAAAATTTAATTAGTGTAATTTTCTGTGAAGCTGTGGCTATCTATGGTGTCATTGTGGCCATCATTTTACAAACAAAACTGGAGAGTGTTTCTGCATCTCAAATTTTTACTCCCGAGTCTCTAACAGCAGGATATTCAATTTTTGCCTCTGGGATTATTGTCGGCTTTGCCAACTTGTTTTGCGGGTTATGTGTAGGGATTATTGGAAGCAGCTGTGCATTATCTGATGCCCAAAACTCATCTCTTTTTGTAAAGATTCTTGTGATCGAGATCTTTGGAAGCGCACTCGGATTATTTGGTAAAAACCTTCCCGAATGGTCTCGACATAGCTCTGACACCTCACCTCAAAAAGATGAGGGTCACAAAATAAGGTGTGCTATGGCTGGATGCGCCCTTGGTAAAGCCATAAAGGCCTACAGCCTTGCAACTTCTTAA | 615 | 45.04 | MAASSLSSWSHALVRISPYTFSAVGIAISIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVSASQIFTPESLTAGYSIFASGIIVGFANLFCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGKNLPEWSRHSSDTSPQKDEGHKIRCAMAGCALGKAIKAYSLATS | 204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3091602 | 3093967 | + | MELO3C003677.2.1 | Cme04g00385 | 324646 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g00385 | 204 | CDD | ATP-synt_Vo_c_ATP6F_rpt2 | 103 | 160 | - | - | |
Cme04g00385 | 204 | CDD | ATP-synt_Vo_c_ATP6F_rpt1 | 21 | 83 | - | - | |
Cme04g00385 | 204 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 5 | 160 | - | - | |
Cme04g00385 | 204 | SUPERFAMILY | F1F0 ATP synthase subunit C | 17 | 86 | IPR035921 | - | |
Cme04g00385 | 204 | Gene3D | - | 19 | 161 | IPR035921 | - | |
Cme04g00385 | 204 | Pfam | ATP synthase subunit C | 108 | 160 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Cme04g00385 | 204 | Pfam | ATP synthase subunit C | 25 | 83 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Cme04g00385 | 204 | PANTHER | V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT | 5 | 160 | - | - | |
Cme04g00385 | 204 | SUPERFAMILY | F1F0 ATP synthase subunit C | 100 | 160 | IPR035921 | - | |
Cme04g00385 | 204 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 146 | 169 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cme04g00385 | 204 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 63 | 87 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cme04g00385 | 204 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 119 | 145 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cme04g00385 | 204 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 37 | 61 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g00385 | Cme-Chr4:3091602 | Cme06g00382 | Cme-Chr6:2410531 | 1.86E-08 | dispersed | |
Cme03g01656 | Cme-Chr3:25321473 | Cme04g00385 | Cme-Chr4:3091602 | 3.43E-96 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g00385 | K03661 | - | csv:101205012 | 287.73 |