Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme04g00388 | ATGGAAGATTTTCATACAGAAAGTTTGGCAAGACGTTATGTGACTTCCATTTACTGGTCAATTACCACTATCACAACCATTGGCTATGGCGATTTGCATCCTGTAAATGAACAAGAAGTTACTTTTTGTGTCTTTTACCTCTTCTTTATTCTTGGCTTGCAAGCTTATCTCATCGGAAATATGACTAACTTGATCGTCCATGGCACCAGTCGAACCAGGAAATTTAGGGACACCATTCAAGCATCCTCGAATTTCGCCAATAGAAATCAACTACCCGTTCGGCTTCAAGAACAGATGCTTGCTCATCTGTGTTTGAAATTCAGAACTGATTTAGAGGGATTACAACAACAAGAGACAGTTGATTCTCTTCCAAAAGCCATCAGATCTAGCATCGCCCTCCATCTCTTCTATTCACTTGTTGATAGAACTTATTTGTTTAATGGAGTATCAACAGACTTGATTTTTCAACTGGTAACTGAAATGAAGGCAGAGTACTTCCCTCCCAAAGAAGATATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATCATTGTCACTGGCGCGGTGGATCTTATTACACAAAGAAATGGAATGGAAGAGATCGTGGGTGAAGCAAAAAAGGGAGATGTCGTTGGTGAGATAGGTGTGCTTAGTTATAAACCACAATTGTTTACAGTCCGAACAAGCCGTTTGAGTCAATTGTTGCGTTTGAATCGTACCTCGTTTTTTAACTTGGTACAAGCTAGCGTTGGGGATGGAGCAATAATAATGAACAATCTCCTTAAGCGCCTGAAGGAGATAAAAGACCCCATCATGGAGGAAATTTTGCAAGAAGCAGAAGAGGCATTGTCTAGGGCCAAAACAGAAATGCCTCTCACTTCATACCATGCTGCCGATAGTGGTGATGATTTATTGTTGCATCAATTGCTAAAGCGGGGTTCAAATCCAAATGAAGTAGATGCCAAAGATGGGAAGACTGCACTACATATTGCAGCAGCCAAAGGAAAAGAACACTGCGTAGCTCTACTCCTAGAGTATGGAGCAAACCCGAACCAAAGAGACTTTGAAGGAAACGTACCCGTCTGGCAAGCAATACAAGGGAAGCATGAGTCCATAGTCAAGCTTCTAATGGACAACGGTGCCAAAATATCTTCAGGCAATGTTGCTCAGTTTGCTTGCACCGCTGCAGAACAAAACAGTATAGATATGCTCAAATCCATCATCCATTGTGGTGGAGACATAACGCTACCAAGAAGCAATGGTACAACAGCTCTTCACATGGCAGTATGTGAAGGAAATAGTGAAACCGTAAAGTTCCTTTTAGATCAGGGGGCTGACATTGATAAGCCAGATGTTAATGGATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAAAGATAAAAGAACTATTCTCTGTCAAGCAAGCTGTGCATACACCAGCTGCTTTCCATATTCCACAAGATCCTGAGTCAAAATACATAAAATTCCCGAGCGAATCAAACATGCCACCGCGGATTTCTGAAAACTCCTGCCCCTCTCCTGTGCAAGAATCAATGTTTTATGATAGGCCTCCTAGAAGGAGGAGCAATAATTATCAGAACTCACTAGTGGGATTCATGACAACTAACAACACCGGTGAGGTTTTATTTTGCTTACTTAAGAAACTCATTGTCTCAATTTCCTAA | 1695 | 41.53 | MEDFHTESLARRYVTSIYWSITTITTIGYGDLHPVNEQEVTFCVFYLFFILGLQAYLIGNMTNLIVHGTSRTRKFRDTIQASSNFANRNQLPVRLQEQMLAHLCLKFRTDLEGLQQQETVDSLPKAIRSSIALHLFYSLVDRTYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIIVTGAVDLITQRNGMEEIVGEAKKGDVVGEIGVLSYKPQLFTVRTSRLSQLLRLNRTSFFNLVQASVGDGAIIMNNLLKRLKEIKDPIMEEILQEAEEALSRAKTEMPLTSYHAADSGDDLLLHQLLKRGSNPNEVDAKDGKTALHIAAAKGKEHCVALLLEYGANPNQRDFEGNVPVWQAIQGKHESIVKLLMDNGAKISSGNVAQFACTAAEQNSIDMLKSIIHCGGDITLPRSNGTTALHMAVCEGNSETVKFLLDQGADIDKPDVNGWTPRGLADHQGHEKIKELFSVKQAVHTPAAFHIPQDPESKYIKFPSESNMPPRISENSCPSPVQESMFYDRPPRRRSNNYQNSLVGFMTTNNTGEVLFCLLKKLIVSIS | 564 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3111404 | 3116083 | - | MELO3C003680.2.1 | Cme04g00388 | 324649 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme04g00388 | 564 | PANTHER | POTASSIUM CHANNEL AKT1 | 2 | 550 | IPR045319 | GO:0005249|GO:0006813 | |
Cme04g00388 | 564 | ProSiteProfiles | Ankyrin repeat profile. | 357 | 389 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | Gene3D | Jelly Rolls | 112 | 289 | IPR014710 | - | |
Cme04g00388 | 564 | Gene3D | - | 1 | 66 | - | - | |
Cme04g00388 | 564 | ProSiteProfiles | Ankyrin repeat profile. | 421 | 453 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | PRINTS | Ankyrin repeat signature | 437 | 451 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | PRINTS | Ankyrin repeat signature | 325 | 340 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | ProSiteProfiles | Ankyrin repeat region circular profile. | 421 | 452 | - | - | |
Cme04g00388 | 564 | PANTHER | POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 | 2 | 550 | - | - | |
Cme04g00388 | 564 | SUPERFAMILY | cAMP-binding domain-like | 70 | 265 | IPR018490 | - | |
Cme04g00388 | 564 | Pfam | Ankyrin repeats (3 copies) | 396 | 474 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | Pfam | Ankyrin repeats (3 copies) | 297 | 385 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | ProSiteProfiles | Ankyrin repeat region circular profile. | 324 | 355 | - | - | |
Cme04g00388 | 564 | Pfam | Ion channel | 12 | 65 | IPR013099 | - | |
Cme04g00388 | 564 | SMART | cnmp_10 | 145 | 262 | IPR000595 | - | |
Cme04g00388 | 564 | MobiDBLite | consensus disorder prediction | 505 | 519 | - | - | |
Cme04g00388 | 564 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 145 | 264 | IPR000595 | - | |
Cme04g00388 | 564 | Gene3D | - | 293 | 476 | IPR036770 | - | |
Cme04g00388 | 564 | ProSiteProfiles | Ankyrin repeat profile. | 324 | 356 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | SMART | ANK_2a | 324 | 353 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | SMART | ANK_2a | 290 | 319 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | SMART | ANK_2a | 421 | 450 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | SMART | ANK_2a | 388 | 417 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | SMART | ANK_2a | 357 | 386 | IPR002110 | GO:0005515 | |
Cme04g00388 | 564 | MobiDBLite | consensus disorder prediction | 504 | 530 | - | - | |
Cme04g00388 | 564 | SUPERFAMILY | Voltage-gated potassium channels | 2 | 102 | - | - | |
Cme04g00388 | 564 | CDD | CAP_ED | 145 | 258 | IPR000595 | - | |
Cme04g00388 | 564 | Pfam | Cyclic nucleotide-binding domain | 165 | 249 | IPR000595 | - | |
Cme04g00388 | 564 | SUPERFAMILY | Ankyrin repeat | 297 | 474 | IPR036770 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01258 | Cme-Chr2:18174400 | Cme04g00388 | Cme-Chr4:3111404 | 0 | dispersed | |
Cme04g00388 | Cme-Chr4:3111404 | Cme12g01221 | Cme-Chr12:20340316 | 1.93E-107 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme04g00388 | K21867 | - | csv:101217334 | 988.408 |