Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00388 ATGGAAGATTTTCATACAGAAAGTTTGGCAAGACGTTATGTGACTTCCATTTACTGGTCAATTACCACTATCACAACCATTGGCTATGGCGATTTGCATCCTGTAAATGAACAAGAAGTTACTTTTTGTGTCTTTTACCTCTTCTTTATTCTTGGCTTGCAAGCTTATCTCATCGGAAATATGACTAACTTGATCGTCCATGGCACCAGTCGAACCAGGAAATTTAGGGACACCATTCAAGCATCCTCGAATTTCGCCAATAGAAATCAACTACCCGTTCGGCTTCAAGAACAGATGCTTGCTCATCTGTGTTTGAAATTCAGAACTGATTTAGAGGGATTACAACAACAAGAGACAGTTGATTCTCTTCCAAAAGCCATCAGATCTAGCATCGCCCTCCATCTCTTCTATTCACTTGTTGATAGAACTTATTTGTTTAATGGAGTATCAACAGACTTGATTTTTCAACTGGTAACTGAAATGAAGGCAGAGTACTTCCCTCCCAAAGAAGATATCATCTTGCAGAATGAAGCACCAACAGATTTCTATATCATTGTCACTGGCGCGGTGGATCTTATTACACAAAGAAATGGAATGGAAGAGATCGTGGGTGAAGCAAAAAAGGGAGATGTCGTTGGTGAGATAGGTGTGCTTAGTTATAAACCACAATTGTTTACAGTCCGAACAAGCCGTTTGAGTCAATTGTTGCGTTTGAATCGTACCTCGTTTTTTAACTTGGTACAAGCTAGCGTTGGGGATGGAGCAATAATAATGAACAATCTCCTTAAGCGCCTGAAGGAGATAAAAGACCCCATCATGGAGGAAATTTTGCAAGAAGCAGAAGAGGCATTGTCTAGGGCCAAAACAGAAATGCCTCTCACTTCATACCATGCTGCCGATAGTGGTGATGATTTATTGTTGCATCAATTGCTAAAGCGGGGTTCAAATCCAAATGAAGTAGATGCCAAAGATGGGAAGACTGCACTACATATTGCAGCAGCCAAAGGAAAAGAACACTGCGTAGCTCTACTCCTAGAGTATGGAGCAAACCCGAACCAAAGAGACTTTGAAGGAAACGTACCCGTCTGGCAAGCAATACAAGGGAAGCATGAGTCCATAGTCAAGCTTCTAATGGACAACGGTGCCAAAATATCTTCAGGCAATGTTGCTCAGTTTGCTTGCACCGCTGCAGAACAAAACAGTATAGATATGCTCAAATCCATCATCCATTGTGGTGGAGACATAACGCTACCAAGAAGCAATGGTACAACAGCTCTTCACATGGCAGTATGTGAAGGAAATAGTGAAACCGTAAAGTTCCTTTTAGATCAGGGGGCTGACATTGATAAGCCAGATGTTAATGGATGGACTCCTCGAGGATTGGCAGATCATCAAGGCCATGAAAAGATAAAAGAACTATTCTCTGTCAAGCAAGCTGTGCATACACCAGCTGCTTTCCATATTCCACAAGATCCTGAGTCAAAATACATAAAATTCCCGAGCGAATCAAACATGCCACCGCGGATTTCTGAAAACTCCTGCCCCTCTCCTGTGCAAGAATCAATGTTTTATGATAGGCCTCCTAGAAGGAGGAGCAATAATTATCAGAACTCACTAGTGGGATTCATGACAACTAACAACACCGGTGAGGTTTTATTTTGCTTACTTAAGAAACTCATTGTCTCAATTTCCTAA 1695 41.53 MEDFHTESLARRYVTSIYWSITTITTIGYGDLHPVNEQEVTFCVFYLFFILGLQAYLIGNMTNLIVHGTSRTRKFRDTIQASSNFANRNQLPVRLQEQMLAHLCLKFRTDLEGLQQQETVDSLPKAIRSSIALHLFYSLVDRTYLFNGVSTDLIFQLVTEMKAEYFPPKEDIILQNEAPTDFYIIVTGAVDLITQRNGMEEIVGEAKKGDVVGEIGVLSYKPQLFTVRTSRLSQLLRLNRTSFFNLVQASVGDGAIIMNNLLKRLKEIKDPIMEEILQEAEEALSRAKTEMPLTSYHAADSGDDLLLHQLLKRGSNPNEVDAKDGKTALHIAAAKGKEHCVALLLEYGANPNQRDFEGNVPVWQAIQGKHESIVKLLMDNGAKISSGNVAQFACTAAEQNSIDMLKSIIHCGGDITLPRSNGTTALHMAVCEGNSETVKFLLDQGADIDKPDVNGWTPRGLADHQGHEKIKELFSVKQAVHTPAAFHIPQDPESKYIKFPSESNMPPRISENSCPSPVQESMFYDRPPRRRSNNYQNSLVGFMTTNNTGEVLFCLLKKLIVSIS 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3111404 3116083 - MELO3C003680.2.1 Cme04g00388 324649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00388 564 PANTHER POTASSIUM CHANNEL AKT1 2 550 IPR045319 GO:0005249|GO:0006813
Cme04g00388 564 ProSiteProfiles Ankyrin repeat profile. 357 389 IPR002110 GO:0005515
Cme04g00388 564 Gene3D Jelly Rolls 112 289 IPR014710 -
Cme04g00388 564 Gene3D - 1 66 - -
Cme04g00388 564 ProSiteProfiles Ankyrin repeat profile. 421 453 IPR002110 GO:0005515
Cme04g00388 564 PRINTS Ankyrin repeat signature 437 451 IPR002110 GO:0005515
Cme04g00388 564 PRINTS Ankyrin repeat signature 325 340 IPR002110 GO:0005515
Cme04g00388 564 ProSiteProfiles Ankyrin repeat region circular profile. 421 452 - -
Cme04g00388 564 PANTHER POTASSIUM CHANNEL AKT1-LIKE ISOFORM X1 2 550 - -
Cme04g00388 564 SUPERFAMILY cAMP-binding domain-like 70 265 IPR018490 -
Cme04g00388 564 Pfam Ankyrin repeats (3 copies) 396 474 IPR002110 GO:0005515
Cme04g00388 564 Pfam Ankyrin repeats (3 copies) 297 385 IPR002110 GO:0005515
Cme04g00388 564 ProSiteProfiles Ankyrin repeat region circular profile. 324 355 - -
Cme04g00388 564 Pfam Ion channel 12 65 IPR013099 -
Cme04g00388 564 SMART cnmp_10 145 262 IPR000595 -
Cme04g00388 564 MobiDBLite consensus disorder prediction 505 519 - -
Cme04g00388 564 ProSiteProfiles cAMP/cGMP binding motif profile. 145 264 IPR000595 -
Cme04g00388 564 Gene3D - 293 476 IPR036770 -
Cme04g00388 564 ProSiteProfiles Ankyrin repeat profile. 324 356 IPR002110 GO:0005515
Cme04g00388 564 SMART ANK_2a 324 353 IPR002110 GO:0005515
Cme04g00388 564 SMART ANK_2a 290 319 IPR002110 GO:0005515
Cme04g00388 564 SMART ANK_2a 421 450 IPR002110 GO:0005515
Cme04g00388 564 SMART ANK_2a 388 417 IPR002110 GO:0005515
Cme04g00388 564 SMART ANK_2a 357 386 IPR002110 GO:0005515
Cme04g00388 564 MobiDBLite consensus disorder prediction 504 530 - -
Cme04g00388 564 SUPERFAMILY Voltage-gated potassium channels 2 102 - -
Cme04g00388 564 CDD CAP_ED 145 258 IPR000595 -
Cme04g00388 564 Pfam Cyclic nucleotide-binding domain 165 249 IPR000595 -
Cme04g00388 564 SUPERFAMILY Ankyrin repeat 297 474 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01258 Cme-Chr2:18174400 Cme04g00388 Cme-Chr4:3111404 0 dispersed
Cme04g00388 Cme-Chr4:3111404 Cme12g01221 Cme-Chr12:20340316 1.93E-107 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00388 K21867 - csv:101217334 988.408