Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00397 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAGAGAAATGAGCTTGTTCGGATTCGCCACGATTCCGACAGTGGGCCTAAACCACTGAAGAATATAAACAGCCAAACATGTCAAATATGTGGCGACACAGTTGGTCTTACAGCCTCTGGTGATGTCTTTGTTGCTTGCAATGAATGTGCATTTCCCGTTTGTCGTCCGTGTTATGAGTATGAGAGGAAAGATGGGAACCAGTCTTGTCCTCAGTGCAAGACTAGATACAAGAGGCACAAAGGGAGTCCTCGCGTTGATGGTGATGACGACGAGGATGATGTGGATGACATTGAGAATGAGTTTAATTACGTACAAGGAAGTAGCAAGACTAAACGACAGTGGCATGGGGAAGATGCTGAACTATCTACTTCTGCGAGACACGAGTCTCAACCTATACCACTCCTTACAAATGGCCAATCAGTGTCTGGAGAAATTCCTTGTGCTACCCCTGATAATCAATCAGTGCGAACCACATCTGGTCCTTTGGGTCCTCCAGAAAAGCATATGCAGTCCCATCCATATGTTGACCCAAGGCAGCCAGTTCCCGTGAGAATTGTGGATCCATCAAAGGATTTGAATTCTTATGGGCTTGGGAATGTTGACTGGAAGGAAAGAGTTGAAGGTTGGAAACTGAAACAAGAGAAAAACATGATGCAGATGACGAGTAGGTACACTGAAGGGAAGGGGGACATGGAGGGCACTGGGTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGGCAACCTCTGAGCCGTGTCGTTCCTATTCCATCCTCTCACTTGACCCCGTATCGTGTTGTGATCATACTTCGTCTTATTATTCTGGGCTTCTTCTTACAGTACCGTTTAACACACCCTGTGAAAGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAAGTTTGGTTTGCCCTTTCCTGGCTTCTGGATCAGTTTCCGAAATGGTCTCCTGTCAATCGTGAGACCTTCCTTGAGAGACTTGCGCTAAGATATGATCGCGAAGGAGAGCCATCACAGTTAGCTCCTGTTGATGTCTTTGTCAGTACTGTGGATCCACTCAAAGAGCCTCCACTAGTCACGGCAAACACTGTGCTTTCCATACTTGCCGTGGACTACCCAGTGGACAAAGTCTCGTGCTATGTATCAGACGATGGTTCAGCAATGCTTACTTTTGAAGCGCTCTCTGAAACTGCAGAATTTGCAAGGAAGTGGGTTCCCTTTTGCAAGAAGCACAACATTGAGCCAAGGGCCCCTGAATTTTATTTTGCTCAAAAAATAGACTACTTGAAGGACAAGATTAAGCCTTCTTTTGTCAAAGAGCGGCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGATTCGAATTAATGCACTTGTTGCCAAAGCACAAAAGATGCCTGAGGAAGGATGGACCATGCAGGATGGAACGCCATGGCCTGGAAACAATCCCAGGGATCATCCTGGAATGATACAGGTTTTCTTAGGTCACAGTGGAGGTCTTGATACTGATGGAAATGAACTGCCGCGACTTGTTTATGTTTCTCGTGAGAAGCGACCAGGTTTCCAGCACCACAAGAAAGCCGGAGCAATGAATGCATTGATCCGAGTTTCTGCTGTGCTTACAAATGGAGCATATCTTTTGAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAGGAAGCCATGTGTTTCATGATGGACCCTGCTTATGGGAAGAAAACATGTTATGTACAATTCCCACAACGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGCAACATAGTCTTTTTCGATATAAACTTGAAGGGGTTGGATGGCCTCCAGGGTCCAGTCTATGTGGGTACTGGTTGTTGTTTCAATCGGCAAGCTCTATATGGTTATGATCCTGTTCTGACCGAGGCAGATTTGGAACCAAATATTATCATTAAGAGTTGCTGTGGTTCAAGAAAGAAGGGAAGGAACAAGAAGTACATTGACAAAAAGAGGGCTGCAAAGAGGACTGAGTCTACCATTCCCATCTTTAATATGGAAGATATCGAGGAAGGTGTTGAAGGATATGATGATGAGAGGTCACTCCTGATGTCTCAGAAGAGTTTAGAGAAGCGCTTTGGCCAATCTCCAGTTTTTATTGCAGCCACTTTCATGGAAATGGGAGGTATTCCACCTTCAACCAATCCTGCAACTCTTCTAAAGGAAGCAATTCATGTCATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGGTGCTTCGATGGGCTTTGGGTTCCATTGAAATCTTGCTTAGCAGGCATTGTCCTATCTGGTATGGCTACAATGGAAGGTTAAAGCTTTTGGAGAGAATAGCGTACATCAATACCATCGTCTACCCTATCACCTCCATTCCTCTTATTGCTTACTGTATGCTTCCGGCGTTCTGTCTTTTGACTGGAAAGTTCATCATTCCCGAGATAAGCAACTTTGCCAGTATGTGGTTCATTCTTCTTTTCGTTTCCATCTTTGCTACGGGTATTCTTGAACTCAGATGGAGTGGGGTTAGCATTGAAGACTGGTGGAGGAATGAACAATTTTGGGTCATTGGTGGTACTTCAGCTCATCTGTTTGCCGTCTTCCAGGGTCTCTTAAAGGTTCTTGCTGGAATCGATACCAACTTCACTGTCACGTCAAAGGCCAGTGATGACGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCTCCCACCACTGTCCTTATTATGAATATGGTCGGTATAGTGGCTGGTGTGTCGTATGCCATTAACAGTGGTTACCAATCTTGGGGTCCTCTTTTTGGTAAGCTGTTCTTCGCATTGTGGGTTATTGTCCATTTATATCCTTTCCTAAAGGGTTTACTGGGAAGGCAAAATCGTACACCAACCATCGTCATTGTCTGGTCCATTCTCCTTGCTTCCATTTTCTCATTGCTTTGGGTGCGAATCGATCCATTTACCTCGGCCTCGACAAAGGCTGCCAACGGTCAATGTGGTATCAACTGCTAG 3099 44.85 MEANAGLVAGSYKRNELVRIRHDSDSGPKPLKNINSQTCQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYVQGSSKTKRQWHGEDAELSTSARHESQPIPLLTNGQSVSGEIPCATPDNQSVRTTSGPLGPPEKHMQSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQMTSRYTEGKGDMEGTGSNGEELQMADDARQPLSRVVPIPSSHLTPYRVVIILRLIILGFFLQYRLTHPVKDAYPLWLTSVICEVWFALSWLLDQFPKWSPVNRETFLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIKPSFVKERRAMKREYEEFKIRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGRNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEMGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLIAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASTKAANGQCGINC 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3163759 3169893 + MELO3C003689.2.1 Cme04g00397 324658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00397 1032 MobiDBLite consensus disorder prediction 118 140 - -
Cme04g00397 1032 Coils Coil 455 475 - -
Cme04g00397 1032 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cme04g00397 1032 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cme04g00397 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 345 445 IPR029044 -
Cme04g00397 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 652 IPR029044 -
Cme04g00397 1032 Pfam Cellulose synthase 357 771 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme04g00397 1032 MobiDBLite consensus disorder prediction 162 192 - -
Cme04g00397 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 771 1032 - -
Cme04g00397 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 771 - -
Cme04g00397 1032 MobiDBLite consensus disorder prediction 75 106 - -
Cme04g00397 1032 PANTHER CELLULOSE SYNTHASE 19 771 - -
Cme04g00397 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cme04g00397 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 375 649 IPR029044 -
Cme04g00397 1032 PANTHER CELLULOSE SYNTHASE 771 1032 - -
Cme04g00397 1032 SUPERFAMILY RING/U-box 22 111 - -
Cme04g00397 1032 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00397 Cme-Chr4:3163759 Cme08g01623 Cme-Chr8:16699527 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00397 K10999 - csv:101205724 2069.28