Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00401 CCATTTTCCTTCTTCTTTTCGATTTGGAGCTCTCGATTTCGGGGAATTCCTACATTCTCTTCTTCCAGAAAGACTACACGCCATACTTCGCATCGAAGAAGGAGAAGAAATTGCGATTCGAAGATGAAAAGAGGACTTTCGACTTCGTCAATTTCTTCCCTACTGTCGCTGAGGTTCACTCGTCAACAATTTTCATCTTCAAAGTTCGGCGTTGATCCACTTCGTCTTCGATTCCTCTCTTCATTTACGAAGCCTCCAGGGCTATTAGATAAGTACAGGGTTCTAGTTGAGCGAGGGGAGCTACAACACGATCCTTTTCAAGAGAGAGTGGCTTCCGAATTGGAGAGTTTGCTTGGAAGGTTGGAGCAATATGAAAAGGATATGGAAGACTATCATGTAAAACTAGCTGAGTGGGAGCAGAATAGGGAGAAGGAGAGGCGCAGACTTTTAATGGAGGAAGCTGAATCTAAACAACAGGGTGATGCAGTAAACAAGCGCAGAAGCAAACTTTTTGAAACATTGATGTTTCGGAAAAAGGCTGAAAATATTGAACCCGGAGTTGGAAAATGGGTTTCTTACCTTAACCGGGAGAAGAAGTTGGATTCACTTATAGGTCGCTGTCCTGCTGCTCCACATGCTCCTAGAGGACTGTACATATATGGCAATGTTGGAAGTGGGAAGACAATGCTCATGGACATGTTTTTCAATGCTACTCAAGGAATTGTTAAACATAGACAAAGGTACCATTTCCACGAGGCTATGCTTAAAATTAACGAAGATATGCACAAGATATGGAAAAATCAAGTGAGGGAGAAATCTTCACAATCAAGCTTTTCGAGTTGGATTATGAATCTTCCATTTGATACAAAAGTGAAGGAGTGGTTGGCTGGAGAAGAAAAATACAAGCAAGAGGTACAGATGAAACACATTCTTCCTGCTGTTGCTGATAAATTTCTTATTGATCAGCAAGCGGGCCATGTAGGAGCTAGCATTCTTTGCTTCGATGAGATACAGACAGTTGATGTATTTGCTATTGTGGCCTTGTCTGGAATTATAAGCAGATTGTTGAGTACTGGAACAGTTCTTGTAGCCACAAGCAATCGAGCTCCAAATGACTTGAATCAGGATGGGATGCAGAAGGATATCTTCCAAAAGTTTGTTATCAAACTGGAGGAGCATTGTGAATTTGTTCTTATTGGCAGTGAGATTGACTACCGGCGCTTTATAGCACAAAGGTCTTTTGACCAGGTGCACTATTTCTGGCCTTTAGATTGCACATCAGTGAGGAAATTTGAAAATATGTGGGTAGAAGTCACCAGCCAATTGGGAGGACAAATCACCTCTGAAACTGTTCCTGTGATGTTCGGAAGAAAATTGGAGGTGCCAGAAAGCTGCAATGGAGTGGCACGATTTGCATTTGATTTTCTCTGTGGTCAACCGGTAGGTGCTGCAGACTATATTGCCTTGGCCAAAAACTACCACACTGTCTTCATATCCAACATCCCAATAATGAGTATGCGCATTCGTGACAAGGCCCGGCGGTTCATCACTCTCATTGATGAGCTATACAATCACCATTGCTGCCTATTTTGCTTGGCAGCTACGTCAATTGAGGAATTATTTCAAGGGACTGAAGAGGGTGCGCTTTTTGATTTGGAGAGTTTTCAGTTTGAAACAGAGGCAGAAGGGGGAAAGCTTCGTCGAAACGTCCTAGTGGAAGGAAATGTAGGATCAGTGGGTGCTCCAACTGCAATTGTGTCAATGCTATCTGGTCAAGAAGAGATGTTTGCATTCCGTCGAGCTGTTTCTCGATTGATCGAGATGCAGACACCTTTATACTTGGAGGGAGTGCGGAACATTCATCCATATTTCCAAAGACGAGAACAAGAATCATCAGTTGATCCTCCAGCCCCCAGGTTTCAGTTCCATCAATTATCTTGA 1941 42.92 PFSFFFSIWSSRFRGIPTFSSSRKTTRHTSHRRRRRNCDSKMKRGLSTSSISSLLSLRFTRQQFSSSKFGVDPLRLRFLSSFTKPPGLLDKYRVLVERGELQHDPFQERVASELESLLGRLEQYEKDMEDYHVKLAEWEQNREKERRRLLMEEAESKQQGDAVNKRRSKLFETLMFRKKAENIEPGVGKWVSYLNREKKLDSLIGRCPAAPHAPRGLYIYGNVGSGKTMLMDMFFNATQGIVKHRQRYHFHEAMLKINEDMHKIWKNQVREKSSQSSFSSWIMNLPFDTKVKEWLAGEEKYKQEVQMKHILPAVADKFLIDQQAGHVGASILCFDEIQTVDVFAIVALSGIISRLLSTGTVLVATSNRAPNDLNQDGMQKDIFQKFVIKLEEHCEFVLIGSEIDYRRFIAQRSFDQVHYFWPLDCTSVRKFENMWVEVTSQLGGQITSETVPVMFGRKLEVPESCNGVARFAFDFLCGQPVGAADYIALAKNYHTVFISNIPIMSMRIRDKARRFITLIDELYNHHCCLFCLAATSIEELFQGTEEGALFDLESFQFETEAEGGKLRRNVLVEGNVGSVGAPTAIVSMLSGQEEMFAFRRAVSRLIEMQTPLYLEGVRNIHPYFQRREQESSVDPPAPRFQFHQLS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3176750 3185696 - MELO3C003691.2.1 Cme04g00401 324662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00401 646 Coils Coil 107 155 - -
Cme04g00401 646 Pfam AFG1-like ATPase 199 545 IPR005654 GO:0005524|GO:0016887
Cme04g00401 646 Gene3D - 207 407 IPR027417 -
Cme04g00401 646 PANTHER AFG1-LIKE ATPASE FAMILY PROTEIN 80 632 - -
Cme04g00401 646 PANTHER ATPASE N2B 80 632 IPR005654 GO:0005524|GO:0016887
Cme04g00401 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 386 IPR027417 -
Cme04g00401 646 MobiDBLite consensus disorder prediction 25 40 - -
Cme04g00401 646 MobiDBLite consensus disorder prediction 20 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00401 - - - csv:101218518 1162.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01025 Cme-Chr2:15183860 Cme04g00401 Cme-Chr4:3176750 1.36E-49 dispersed
Cme04g00401 Cme-Chr4:3176750 Cme12g00664 Cme-Chr12:12199895 3.60E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g464 . Blo12g01080 . Bda03g00067 . . Bma04g00064 . . . . . Car09g00408 . . . . . . . . . . . Cla05g01746 Cam05g1859 Cec05g1871 Cco05g1934 Clacu05g1850 Cmu05g1731 Cre05g1863 . . . . Lsi04g02139 Csa03g04343 Chy04g00359 . . . . . . Bpe04g00052 . . Sed05g1692 . Cmo09g00473 Cma09g00466 . . . . . Bhi09g02257 Tan01g3659 Cmetu04g0660 . . . . . . . . . . . . . . Cme04g00401
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008383 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 3 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00401 Cme_Chr04 FPKM 44.397701 44.976067 62.323654 63.309528 10.935806 12.564978 11.474311 18.86928 18.288139 17.844757