Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00406 ATGGTTTATTCAAGGAAGTTCAGAGGAGTCAGGCAGCGGCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCATTGCTGAAGAGAAGAGTGTGGCTAGGGACATTCGACTCAGCCGAGGATGCAGCACGAGCGTACGATCAAGCAGCCATTTTAATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCATCAAAAGACCAATCTGAAGAAGCCAGCCATGGCCATGGTTCTTCTCCAATGTCTCCAAAAGCACTTTCGGAGCTACTCAGCACAAAGCTCAGAAAGTGCTGCAAGAACCCATCTCCTTCCTTGACATGCCTACGGCTCGACAGTGACACCGCTCACATCGGTGTATGGCAGAAGCGTGCAGGCACTCGAGCCACTTCCAATTGGGTCATGAGGATTGAGCTAGGGAAGAAAGAGGTACCTTCGTCTGAATCCACAAGCTGCCAAGAAGCCGATGGCGATGACCACCAAAATGAAATTGATGAAGAAGATAGAATTGCAATGCAAATGATTGAAGAGTTACTCAATTGGAACTGCCCTCTTCCTTCAACTTCCAGCTAA 570 48.95 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDSAEDAARAYDQAAILMNGQNAKTNFPASKDQSEEASHGHGSSPMSPKALSELLSTKLRKCCKNPSPSLTCLRLDSDTAHIGVWQKRAGTRATSNWVMRIELGKKEVPSSESTSCQEADGDDHQNEIDEEDRIAMQMIEELLNWNCPLPSTSS 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3219740 3221709 - MELO3C003695.2.1 Cme04g00406 324667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00406 189 MobiDBLite consensus disorder prediction 141 166 - -
Cme04g00406 189 MobiDBLite consensus disorder prediction 59 84 - -
Cme04g00406 189 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Cme04g00406 189 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cme04g00406 189 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cme04g00406 189 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cme04g00406 189 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Cme04g00406 189 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cme04g00406 189 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cme04g00406 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 187 - -
Cme04g00406 189 MobiDBLite consensus disorder prediction 152 166 - -
Cme04g00406 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 187 - -
Cme04g00406 189 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00406 Cme-Chr4:3219740 Cme05g01917 Cme-Chr5:27852221 2.00E-71 dispersed
Cme02g01203 Cme-Chr2:17354064 Cme04g00406 Cme-Chr4:3219740 9.82E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
41148 PF00847 AP2 8.80E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00406 - - csv:101206916 360.533