Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00407 ATGTCGAAGCTCTTCGCCTTTTCCGGTAGTGAAGATTTTTGCACTGGAGGGTCAATATACCCAAATCCCAAGGACTCCAGTTTATTCTTGTCCCTTCCTCACCACGTTGATGTCTATTTTCCTCCTCGAAAGAGGTCTCGCATCACTGCTCCATTTGTGTTTGGTGGAGAAGAAGTTGAATCAAAAGCAAATGTTTCTATCGAGATTCTTCCGGATGAGTGCCTGTTTGAGATTTTCAGACGGTTGTCTGGTGGCAAAGAAAGGAGTGCCTGCGCAACCGTTTCTAAACGATGGCTAATGCTTTTGAGCAATATATCTTCCCACGAGTTGAAATCTGAGGATGTGGTGGCTTCAAAGGAGGTTGAAGACATTGAAATTGAGAGTGATGGATATCTGTCTAGGAGTTTGGAAGGCAAGAAGGCGACAGATCTCAGACTTGCTGCCATTTCAGTTGGAACTGCAGGTCGAGGGGGTTTAGGCAAGCTTGTGATTCGTGGAAATAATCATGTCAGTAAGGTTACAGACCTCGGACTTAAGGCAATTGCTCGTGGGTGTCAATCGCTGAGGGCTCTTTCTTTGTGGAATCTTTCTTCTATTAGAGATGGAGGTCTTTGTGAGATTGCCAAGGCGTCTCACCAGTTGGAGAAGCTTGATCTCTGTCGATGTCCTGCTGTATCTGACAAGGCTGTGGTTGAAATAGCAAGGAACTGCCCGAAGTTGACTGATATTACAATTGAATCTTGTGCGCAAATTGGAAATGAAAGTCTGCGGGCTATTGGGCAGTTCTGCACCAAGCTGAAGTCTATTGTGATTAAAGATTGCCCACTCGTTGGAGATCAGGGAATTGCTAGTTTGTTGTCTTTGAACACTTGTGCCTTGAATAAGGTAAAGCTTCAGGCGCTGAATGTTTCCGATGTGTCCCTTGCTGTTATTGGGCACTATGGCAAGGCAGTGACGGACCTTGTCCTTACCGATCTTAAAAATGTTAGTGAAAAAGGGTTCTGGGTCATGGGTAATGGTCATGGGCTACAAAAATTGAAGTCATTCACAATTTCCTCCTGCAATGGAGTGACAGACATGGGCCTTGAATCTGTTGGAAAGGGTAGTCCAAATTTAAAGCATTTCTGTCTTAGGAAGTGTTCGTTTTTATCTGATAATGGCCTGGTCTCTTTTGCAAAAGCTGCAAGGTCGCTAGAATGCTTGCAATTGGAAGAGTGCCACAGGATCACTCAGTTTGGATTCTTTGGTGTCGTTTTGAACTGCAGTGCAAGTTTGAAGGCTCTTTCTCTCATAAGCTGCTTGGGAATTAAGGACATTAACTCTGAATTGCCTATCCCAGCCTCTAGTGGATCCTTGCGGTCGTTGACCATTCGCAACTGCCATGGTTTTGGCAACAGAAACCTTGCTTTACTGGGCAAGCTATGCCCCCAGTTGCAAAATGTTGATTTTAGTGGACTTGTTGGAATTGATGATTGTGGATTTCTAGCTTGGCTCCAAAACTGTCAGTCGGGTTTAGTGAAGATCAATCTTAGTGGTTGTGTCAACCTGACCGACGAGGTCATTTCATCCATAATCGAGCACCATGGTTGGACCCTTAAAGTGCTTAATCTCGACAGTTGTAAGAAGATCACTGATGCTAGCATGACTTCCATCGCAAACAACTGCCCGTTACTCAGTGATCTCGATGTCTCGAAATGCTCGATCACGGATTCAGGAATTGCAACTCTAGCTTGTGCCAAGCAACCGAATCTGCAGATCTTTTCGATTTCTGGTTGCTCATTTGTGTCGGACAAAAGCTTGGCAGACTTGATAAAATTGGGTGAGACTCTTGTGGGTCTCAACATCCAGCATTGTAATGCTATCAGCAGTAGCACTGTTGATCTGCTTGTGGAGCAGCTCTGGAGATGTGACATTCTTTCATAA 1923 44.72 MSKLFAFSGSEDFCTGGSIYPNPKDSSLFLSLPHHVDVYFPPRKRSRITAPFVFGGEEVESKANVSIEILPDECLFEIFRRLSGGKERSACATVSKRWLMLLSNISSHELKSEDVVASKEVEDIEIESDGYLSRSLEGKKATDLRLAAISVGTAGRGGLGKLVIRGNNHVSKVTDLGLKAIARGCQSLRALSLWNLSSIRDGGLCEIAKASHQLEKLDLCRCPAVSDKAVVEIARNCPKLTDITIESCAQIGNESLRAIGQFCTKLKSIVIKDCPLVGDQGIASLLSLNTCALNKVKLQALNVSDVSLAVIGHYGKAVTDLVLTDLKNVSEKGFWVMGNGHGLQKLKSFTISSCNGVTDMGLESVGKGSPNLKHFCLRKCSFLSDNGLVSFAKAARSLECLQLEECHRITQFGFFGVVLNCSASLKALSLISCLGIKDINSELPIPASSGSLRSLTIRNCHGFGNRNLALLGKLCPQLQNVDFSGLVGIDDCGFLAWLQNCQSGLVKINLSGCVNLTDEVISSIIEHHGWTLKVLNLDSCKKITDASMTSIANNCPLLSDLDVSKCSITDSGIATLACAKQPNLQIFSISGCSFVSDKSLADLIKLGETLVGLNIQHCNAISSSTVDLLVEQLWRCDILS 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3233873 3236912 + MELO3C003696.2.1 Cme04g00407 324668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00407 640 Pfam F-box-like 69 101 IPR001810 GO:0005515
Cme04g00407 640 Gene3D Ribonuclease Inhibitor 443 640 IPR032675 -
Cme04g00407 640 Gene3D - 60 109 - -
Cme04g00407 640 SMART fbox_2 70 111 IPR001810 GO:0005515
Cme04g00407 640 SUPERFAMILY F-box domain 61 103 IPR036047 GO:0005515
Cme04g00407 640 Gene3D Ribonuclease Inhibitor 133 249 IPR032675 -
Cme04g00407 640 Gene3D Ribonuclease Inhibitor 250 442 IPR032675 -
Cme04g00407 640 PANTHER UNCHARACTERIZED 16 631 - -
Cme04g00407 640 SUPERFAMILY RNI-like 172 411 - -
Cme04g00407 640 SUPERFAMILY RNI-like 339 604 - -
Cme04g00407 640 Pfam Leucine Rich repeat 555 577 IPR001611 GO:0005515
Cme04g00407 640 Pfam Leucine Rich repeat 531 552 IPR001611 GO:0005515
Cme04g00407 640 SMART LRR_CC_2 185 210 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 449 474 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 237 262 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 343 368 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 263 288 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 395 420 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 211 236 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 555 579 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 502 527 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 369 394 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 529 554 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 581 606 IPR006553 -
Cme04g00407 640 SMART LRR_CC_2 475 500 IPR006553 -
Cme04g00407 640 PANTHER - 16 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00407 K14515 EBF1_2; EIN3-binding F-box protein - csv:101207154 1227.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01616 Cme04g00407 CCT
Cme03g01616 Cme04g00407 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00407 Cme-Chr4:3233873 Cme05g01913 Cme-Chr5:27795795 0 dispersed
Cme02g00061 Cme-Chr2:547949 Cme04g00407 Cme-Chr4:3233873 1.18E-18 transposed
Cme02g00297 Cme-Chr2:2457283 Cme04g00407 Cme-Chr4:3233873 1.02E-07 transposed
Cme03g00431 Cme-Chr3:5999698 Cme04g00407 Cme-Chr4:3233873 2.03E-08 transposed
Cme10g01037 Cme-Chr10:8597822 Cme04g00407 Cme-Chr4:3233873 9.02E-10 transposed
Cme02g01198 Cme-Chr2:17252740 Cme04g00407 Cme-Chr4:3233873 0 wgd
Cme03g01616 Cme-Chr3:25052467 Cme04g00407 Cme-Chr4:3233873 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005429 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00407 Cme_Chr04 FPKM 35.284599 40.832188 24.757799 24.255205 22.259388 21.223928 23.059778 38.441452 39.159157 38.319534