Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00409 ATGGGCGCTTCAAATTTTGGCGGTTTTATCTGTTTATTGGCTTGGTTGTTGTTTCTATTCTTTTTGATTCAATGTGAAGTATGCTTTGCAAGTATTCGGAGTTTTGGGGAAATCTCTCCAGGCTTTCAAGGCTCTCAAATGAACTGGATTGATAACAATGGGTTGTTTCTTATGTCAAATAATTCTAAATTTGGATTTGGGTTTGTGACTACTCAAGACGTTACAATGTTTTTATTGGCTGTCATCCACACAAGCAGCTTAAGAGTAGTTTGGTCTGCAAATAGAGCATTTCCTGTTGCTAATTCTGATATGTTTACATTTGATGAGAAGGGAAATGCAATGTTGAAGAAAGGTTCTGTTGTGGTTTGGTCTACAAATTCTAGTGATAAAGGGGTTTCCTCCTTGGAGTTGCAAAACTCGGGAAATTTGGTTTTACGAGCGAACAATAGCGACAATGAAATAGTTTGGGAGAGTTTTAGCCATCCAACTGATACTCTTTTATCAGGGCAGGATTTTGTTGAAGGAATGAGACTTGTGAGTGATCTTAGCAATAATAATATGAGTTATTTCCTTGAAATGAAGTCTGGTGATATGACTCTCTCAGCAGGTTTCCAATCACCACAGACTTACTGGTCTATGGCTAAGGAGAATCGTAAAACCGTTAATAAAAATGGCAGGGCAGTCTACTCGGCGACTCTTGATACGAACTCTTGGAAGTTCTATGATCGGAGCAAAGTCCTGCTCTGGCAATTCATCTTCTCGAATGTAGCCAGTGAAAATGCTACTTGGACAGCAGTTTTAGGAGATGATGGTTTTGTGTCTTTTTATAATCTTCAAGATTCTGGTGCGGCTTCAACTACTAGGATACCTGAAGACTCTTGTAGCACACCGGAGCCGTGTGGTTCGTATTTTATATGTTATAGTGGGAACAAATGCCAGTGCCCTTCAGTTCTTAGCACAAATCCGAGTTGCCAACCTGGGATTGTCTCTCCTTGTGATCAATCGAATGGAAGTATAAAGCTTGCATATGCAGGGACTGGGGTCAAATATTTTGCACTCGAATTCCTACCATCCACTTCAACGACCGATTTAAATGGTTGCAAAAACTCTTGCATGAGTAACTGTTCTTGCCGTGCATTGTTCTTTGAAAGTGGAACAGGGAACTGTTTCTTGTTGGACGACGTAGGTAGCTTTCAAAACTCCAATGAGGAGTCTGACTTTGTCTCGTACATCAAGGTCTTGAACGACGGAGGTATTGGTGACAACAACGGTGGGAGTAGAAATGTTGGGATGAACTCTCATATTGTTGCGGTCATCATTGTTTGCACCGTGTTCATTATTTTTGGTCTAGTTTATTTGGCGTTTTGTTATTACAGGAGAAAGAAAAAACTGCCAGGAACTCCTCACGAGACTTCCGAGGATGATAACTTCTTGGATGGTTTAACGGGAACACCCATTCGTTATAGCTACGACGATCTTCAAACTGCAACCAATAATTTCTCTATGAAACTTGGTCAAGGAGGATTTGGCTCAGTATATCAAGGACTTCTACCTGATGGAACTCGGGTTGCCGTGAAGAAATTGGAAGCAGTCGGTCAGGGAAAGAAGGAGTTTCGAGCTGAAGTGAGCATAATTGGTAGTATTCATCATGTTCACTTGGTCAGGCTCAAGGGCTATTGTGCTGAAGGATCACACAAGCTTCTTGCTTATGAATACATGGGAAATGGGTCTTTAGACAAATGGATATTTAGGAAGAATAAAGAAGATTTTTTGTTAGATTGGAATACAAGATTCAATATTGCATTAGGAACAGCTAAAGGACTAGCTTATCTCCATGAAGATTGTGATGTAAAGATAATTCACTGTGACATCAAACCTGAAAATGTGCTTCTTGACGACAAATTTCTTGCAAAAGTTTCAGATTTTGGCCTTGCAAAGCTAATGACACGTGAGCAGAGTCATGTTTTTACGACACTAAGAGGAACTCGAGGGTATCTTGCTCCAGAGTGGATCACAAACTACGCCATTTCAGAGAAGAGTGACGTGTATAGCTACGGTATGGTGTTGCTCGAGATAATTGGTGGAAGAAAAAACTTCGACTCAACAGAAACTTCAGAAAAATGCCACTTCCCATCTTATGCTTTTAAAATGATGGAAGAAGGAAAACTTGAAAACATCCTTGACTCAAATCTGGTCATAAAAAATGGTGATGAGAGAGTTTTTACAGCCATTAAAGTTGCACTGTGGTGCATACAAGAAGATATGCACCTCAGGCCACCAATGACTAGAGTAGTCCAAATGCTTGAAGGCCTTTGTGACGTTCCTCCGCCTCCAACTTCCTCCCCACTCGGTTCTCGCCTATTTTCAAGTTTCTTCAAATCAATCAGTGAGGGAGGAACCTCTTCAGGGCCATCGGACTGCAACAGTGATGCATATCTTTCGGCCATGAAGCTCTCCGGGCCAAGATGA 2469 41.07 MGASNFGGFICLLAWLLFLFFLIQCEVCFASIRSFGEISPGFQGSQMNWIDNNGLFLMSNNSKFGFGFVTTQDVTMFLLAVIHTSSLRVVWSANRAFPVANSDMFTFDEKGNAMLKKGSVVVWSTNSSDKGVSSLELQNSGNLVLRANNSDNEIVWESFSHPTDTLLSGQDFVEGMRLVSDLSNNNMSYFLEMKSGDMTLSAGFQSPQTYWSMAKENRKTVNKNGRAVYSATLDTNSWKFYDRSKVLLWQFIFSNVASENATWTAVLGDDGFVSFYNLQDSGAASTTRIPEDSCSTPEPCGSYFICYSGNKCQCPSVLSTNPSCQPGIVSPCDQSNGSIKLAYAGTGVKYFALEFLPSTSTTDLNGCKNSCMSNCSCRALFFESGTGNCFLLDDVGSFQNSNEESDFVSYIKVLNDGGIGDNNGGSRNVGMNSHIVAVIIVCTVFIIFGLVYLAFCYYRRKKKLPGTPHETSEDDNFLDGLTGTPIRYSYDDLQTATNNFSMKLGQGGFGSVYQGLLPDGTRVAVKKLEAVGQGKKEFRAEVSIIGSIHHVHLVRLKGYCAEGSHKLLAYEYMGNGSLDKWIFRKNKEDFLLDWNTRFNIALGTAKGLAYLHEDCDVKIIHCDIKPENVLLDDKFLAKVSDFGLAKLMTREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNFDSTETSEKCHFPSYAFKMMEEGKLENILDSNLVIKNGDERVFTAIKVALWCIQEDMHLRPPMTRVVQMLEGLCDVPPPPTSSPLGSRLFSSFFKSISEGGTSSGPSDCNSDAYLSAMKLSGPR 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3259627 3262250 - MELO3C003698.2.1 Cme04g00409 324670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00409 822 Pfam D-mannose binding lectin 89 172 IPR001480 -
Cme04g00409 822 ProSitePatterns Protein kinases ATP-binding region signature. 504 527 IPR017441 GO:0005524
Cme04g00409 822 Gene3D Transferase(Phosphotransferase) domain 1 573 774 - -
Cme04g00409 822 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 16 822 - -
Cme04g00409 822 CDD STKc_IRAK 504 771 - -
Cme04g00409 822 PIRSF SRK 10 818 IPR024171 GO:0004674
Cme04g00409 822 SMART blect_4 48 162 IPR001480 -
Cme04g00409 822 ProSiteProfiles Protein kinase domain profile. 498 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00409 822 SMART serkin_6 498 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00409 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Cme04g00409 822 CDD B_lectin 50 162 IPR001480 -
Cme04g00409 822 Gene3D Phosphorylase Kinase; domain 1 469 572 - -
Cme04g00409 822 Gene3D - 48 161 IPR036426 -
Cme04g00409 822 ProSiteProfiles PAN/Apple domain profile. 332 415 IPR003609 -
Cme04g00409 822 ProSiteProfiles Bulb-type lectin domain profile. 42 158 IPR001480 -
Cme04g00409 822 Pfam Protein kinase domain 501 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme04g00409 822 CDD PAN_AP_plant 347 413 - -
Cme04g00409 822 SUPERFAMILY Protein kinase-like (PK-like) 482 769 IPR011009 -
Cme04g00409 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 179 IPR036426 -
Cme04g00409 822 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 16 822 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00409 - - - csv:101207644 1599.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme03g01614 Cme04g00409 CCT
Cme03g01614 Cme04g00409 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01250 Cme-Chr2:18049485 Cme04g00409 Cme-Chr4:3259627 1.63E-99 dispersed
Cme04g00409 Cme-Chr4:3259627 Cme01g00378 Cme-Chr1:2753155 2.91E-120 dispersed
Cme08g02535 Cme-Chr8:32343725 Cme04g00409 Cme-Chr4:3259627 4.03E-07 dispersed
Cme04g02432 Cme-Chr4:30950751 Cme04g00409 Cme-Chr4:3259627 3.71E-20 transposed
Cme07g00874 Cme-Chr7:8753609 Cme04g00409 Cme-Chr4:3259627 4.85E-148 transposed
Cme07g02059 Cme-Chr7:25495017 Cme04g00409 Cme-Chr4:3259627 0 transposed
Cme03g01614 Cme-Chr3:25043411 Cme04g00409 Cme-Chr4:3259627 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g485 Blo01g01390 . Bda01g00747 . Bpe02g01248 Bpe02g00561 . . . Cmo12g00289 . . Car09g00401 Car12g00321 . Cpe07g00298 Cpe06g00340 Bhi04g00947 . . . . . Lcy13g1792 Cla05g01737 . . . . . . Cone4ag1783 Cone7ag1698 . . Lsi04g02129 Csa03g04335 Chy04g00367 Cme03g01614 . Blo18g00024 Bda01g01002 Bda13g01262 Bpe14g00581 . Bma01g01276 Bma02g00024 . . Cmo09g00467 Cma09g00458 Cma12g00340 . . . . Bhi09g02238 . . . . Mch11g0555 . Cla08g01336 . . . . . . Lsi08g01207 . Chy03g01118 Cme04g00409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001479 3 3 3 4 3 2 2 2 2 2 2 2 2 2 1 2 2 7 2 2 2 2 2 2 1 2 1 2 2 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64791 PF00069 Pkinase 3.90E-50 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00409 Cme_Chr04 FPKM 7.631915 9.852343 0.41803 0.609685 1.419917 0.0 1.087303 0.156194 0.0 0.238674