Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00411 ATGGCGCCTAGTACGATCCGGAAGGCGGTCGGAGCTCTGAAGGACCAGACGAGTATTGGAATTGCGAAGGTAGCGAGTAATATGGCGCCGGACCTTGAGGTGGCGATTGTGAAGGCGACGAGTCATGATGATGATCCGGCGAGTGAGAAGTACATCAGGGAGATTTTGAGCTTGACATCTTATTCTCGTGGATATGTGAGTGCGTGTGTTTCGGCGATTTCGAAGCGTTTGGCTAAGACGAGGGATTGGATTGTGGCGCTTAAGGCACTCATACTTGTGCATAGGTTGTTGAATGAAGGGGACCCGGTGTTTCAGGAGGAGATCTTGTATGCTACTAGAAGGGGTACGAGGCTGTTGAATATGTCTGATTTTAAGGATGAAGCTCATTCGAGCTCGTGGGATCACTCGGCTTTTGTTCGAACTTATGCATTCTACTTGGATCAACGGCTGGAATTGATGTTGTTTGAGAAGAAAGGTGGCAGTGCAAGGGGAAATTCCCGTGGGGATGATAGATTTGATGGAAGAGATGACTTTAGATCTCCGCCCCCAAGGCCTTACGATAACGGTTATGGCGAGTATAGGGGAGAAAGAGAGTATGGAAACTATGGTGGGATGAGGAGGTCTAGATCTTATGGTGATGTGGGTGAGTCTACGGGCAGGGATGGGCAGGGGCAGGGGCGTAACAACAAGGGGCCTGTGACTCCGTTGAGGGAAATGACGATCGAGAGAGTTTTTGGGAAGATGGGACATTTGCAGAGACTGTTGGATAGGTTCTTGTCGTGTCGACCTACTGGGTTGGCAAAGAATAGTAGGATGATATTGTATGCTTTGTACCCTCTAGTTAGGGAAAGTTTTCAATTGTATGCAGATATTTGTGAGGTTTTGGCTGTTTTGCTTGACAAATTCTTTGATATGGAGTATTCTGACTGTATGAAGGCATTTGATGCTTATGGTAGCGCAGCCAAGCAGATTGATGAGCTAATTGCATTCTATAATTGGTGTAAAGATACAGGCGTTGCTAGATCCTCTGAGTATCCCGAGGTGCAGAGAATCACCAGCAAGTTACTCGAAACATTGGAGGAGTTTTTGAGGGAAAGAGGGAAGAGGCCAAAGAGTCCCGAGAGAGAGCCACCTCCGCCTGCGCCTGAAGAGGAAGAACCGGCACCTGATATGAATGAGATTAAAGCTCTTCCTCCACCAGAAAATTACACTCCACCTCCGCCTGAGCCTGAGCCCCAGCCTGCGCCCAAACCTCAACCGCAAGTCACGGATGACTTGGTCAATCTGAGAGATGATGCAGTTAGTGCAGATGATCAAGGTAACAAACTGGCATTGGCTCTGTTTGCTGGTCCAGCAGCTAATGGTGCAAACGGATCCTGGGAAGCTTTCCCTTCCGATGGACAGCCAGAAGTAACCTCTGCTTGGCAGACCCCGGCTGCTGAACCTGGCAAAGCCGATTGGGAGTTAGCTTTGGTTGAAACAGCAAGCAATTTATCAAGGCAGAAAGCAGCACTCGGTGGTGGACTCGACCCACTGTTGTTAAATGGCATGTATGATCAAGGAATGGTTAGGCAGCACACTAGCACTGCACAGCTGAGTGGTGGAAGCGCAAGCAGTGTAGCTTTGCCCGGCCCCGGAAACAGCAAAACTCCTGTACTGGCTCTTCCAGCACCGGATGGAACTGTCCAGGCAGTGAATCAGGATCCTTTCGCAGCATCGTTAAGCGTACCACCTCCTTCTTATGTCCAAATGGTGGAGATGGAGAAGAAACAGCATCTGCTTATGCAGGAACAGCAGTTATGGCAGCAGTATGCAAGAGATGGGATGCAAGGGCAGAGCAGTTTGAACAAAATCAGTAACCCCCCGGGTTACTACAACATGGGCGTGGCACCAATGGCTCCCATGCCCTACGGAATGCCTCCAATGAACGGAATGGGCGGTAAGCAGGATAAATGA 1956 49.49 MAPSTIRKAVGALKDQTSIGIAKVASNMAPDLEVAIVKATSHDDDPASEKYIREILSLTSYSRGYVSACVSAISKRLAKTRDWIVALKALILVHRLLNEGDPVFQEEILYATRRGTRLLNMSDFKDEAHSSSWDHSAFVRTYAFYLDQRLELMLFEKKGGSARGNSRGDDRFDGRDDFRSPPPRPYDNGYGEYRGEREYGNYGGMRRSRSYGDVGESTGRDGQGQGRNNKGPVTPLREMTIERVFGKMGHLQRLLDRFLSCRPTGLAKNSRMILYALYPLVRESFQLYADICEVLAVLLDKFFDMEYSDCMKAFDAYGSAAKQIDELIAFYNWCKDTGVARSSEYPEVQRITSKLLETLEEFLRERGKRPKSPEREPPPPAPEEEEPAPDMNEIKALPPPENYTPPPPEPEPQPAPKPQPQVTDDLVNLRDDAVSADDQGNKLALALFAGPAANGANGSWEAFPSDGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKAALGGGLDPLLLNGMYDQGMVRQHTSTAQLSGGSASSVALPGPGNSKTPVLALPAPDGTVQAVNQDPFAASLSVPPPSYVQMVEMEKKQHLLMQEQQLWQQYARDGMQGQSSLNKISNPPGYYNMGVAPMAPMPYGMPPMNGMGGKQDK 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3275055 3278632 - MELO3C003700.2.1 Cme04g00411 324672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00411 651 Gene3D - 2 155 IPR008942 -
Cme04g00411 651 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Cme04g00411 651 Pfam ANTH domain 31 365 IPR011417 GO:0005543
Cme04g00411 651 MobiDBLite consensus disorder prediction 160 233 - -
Cme04g00411 651 MobiDBLite consensus disorder prediction 363 382 - -
Cme04g00411 651 MobiDBLite consensus disorder prediction 526 545 - -
Cme04g00411 651 Gene3D ANTH domain 227 372 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Cme04g00411 651 MobiDBLite consensus disorder prediction 363 423 - -
Cme04g00411 651 MobiDBLite consensus disorder prediction 160 182 - -
Cme04g00411 651 PANTHER - 5 629 - -
Cme04g00411 651 SMART enth_2 30 160 IPR013809 -
Cme04g00411 651 PANTHER CLATHRIN ASSEMBLY PROTEIN 5 629 IPR045192 GO:0048268|GO:0072583
Cme04g00411 651 MobiDBLite consensus disorder prediction 399 419 - -
Cme04g00411 651 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Cme04g00411 651 CDD ANTH_N_AP180_plant 32 152 - -
Cme04g00411 651 SUPERFAMILY GAT-like domain 235 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00411 - - - csv:101207892 1119.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00411 Cme-Chr4:3275055 Cme05g01288 Cme-Chr5:21176158 1.50E-16 dispersed
Cme01g00271 Cme-Chr1:2014155 Cme04g00411 Cme-Chr4:3275055 2.20E-163 transposed
Cme05g00331 Cme-Chr5:2438494 Cme04g00411 Cme-Chr4:3275055 4.13E-88 transposed
Cme07g01152 Cme-Chr7:15183547 Cme04g00411 Cme-Chr4:3275055 8.02E-17 transposed
Cme11g01287 Cme-Chr11:19620393 Cme04g00411 Cme-Chr4:3275055 1.00E-11 transposed
Cme02g01182 Cme-Chr2:17006652 Cme04g00411 Cme-Chr4:3275055 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g489 Blo01g01391 Blo12g01075 Bda01g00749 Bda03g00072 Bpe02g01249 Bpe02g00559 Bma04g00069 . . . . . . . . . Cpe06g00339 . . . . . . . Cla05g01735 Cam05g1849 Cec05g1861 Cco05g1921 Clacu05g1837 Cmu05g1720 Cre05g1851 . . . . Lsi04g02125 Csa03g04333 . . Blo17g00018 Blo18g00021 . Bda13g01259 Bpe14g00582 Bpe04g00057 Bma01g01275 Bma02g00022 Sed05g1706 . Cmo09g00466 Cma09g00455 . . . . . Bhi09g02235 Tan01g3643 Cmetu04g0392 . Hepe01g2019 Mch11g0554 . . . . . . . . . . . Cme04g00411
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001058 4 2 5 5 5 2 0 2 2 1 2 2 2 2 2 3 2 3 3 2 1 3 3 3 4 4 2 5 4 1 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00411 Cme_Chr04 FPKM 21.873014 21.496786 19.381681 18.388872 15.069874 15.194273 17.579382 17.134848 16.361578 17.986364