Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme04g00422 ATGAAGCAGAGTATATCTGAAGCAGTATCTTCATCATCCACCACGGCTTCATCGGACCACTCCCAATCTTCCTCCTCCTCCTCCTCATCGTCGTCGTCTTCAACATCGACGACACCGTTAGAGAAGCCTCAATCCATTTCTGCTGCAGCTGCTGCAGAGGATTTGGCCGTCGGTTCAAGAGATGGCGGCGGAGCACAAGAAACGGTTACTGTCGATCGACGAGGGGACTTCTCCGCGGTCTGTAGATGGACAGTACAAAATTTTCCAAGAATCAAGGCTAGGGCTCTATGGAGCAAGTACTTTGAGGTTGGAGGTTACGATTGTCGTTTATTGATATATCCAAAAGGGGATTCCCAAGCACTCCCTGGGTATATTTCAATCTACCTTCAAATCGTCGACCCGCGCGGCACATCCTCTTCTAAATGGGATTGCTTTGCGAGTTATCGTCTGGCTATCGTCAACGTTCTCGATGATTCGAAGACCGTTCATCGGGATTCATGGCATCGTTTCTCGAGCAAGAAGAAGTCACACGGATGGTGCGATTTTACTCCTTCTTCCACCGTGTTTGATTCTAAGCTTGGTTATTTGTTTAATAATGAGTCTATTTTGATCACTGCTGATATTCTAATTCTCAATGAGTCTGTAAACTTTACTCGGGATAACAATGAGCCAGCCTCATCTATGATGATGACATCCTCGCTTGTTGCTTGCCCTGCGCCTGAGGTGCTCAGCGGTAAGTTCACATGGAAAGTTCATAATTTTAGTTTGTTTAAAGAGATGATTAAAACACAGAAAATAATGAGTCCGGTGTTCCCGGCTGGAGAGTGTAATTTGAGGATTAGTGTCTATCAAAGCTCAGTTAATGGGGCTGAGTATTTGTCAATGTGTCTGGAGAGCAAGGATACCGAAAAGACAGTAATATTACCTGATAGGAGTTGTTGGTGTTTGTTCCGGATGTCCGTGTTAAACCAGAAGCCTGCTTTGAATCACATGCATCGAGACTCATATGGGAGATTTGCAGCTGATAATAAGAGTGGGGACAATACCAGTTTGGGGTGGAATGACTATATGAAGATGTCAGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGACGACACTGCTGTGTTTAGTACCTCCTTTCATGTGATCAAGGAGTTTAGTAATTTTTCAAAGAATGGCGGATTAATTGGAGGTAGAAATGGAAGTGGAATTAGAAAATCAGATGGTCACATGGGGAAATTCACGTGGAGGATTGAGAACTTCACAAGGCTAAAGGACCTACTGAAGAAGAGGAAGATTACAGGTCTTTGCATCAAGAGCAGGAGATTTCAGGTTGGGAACCGTGACTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACGGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTAGTAAACCAGAAGATGGAAGAGAAATCTGTTACAAAGGAGTCTCAAAACCGGTACTCTAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTGACACTTACCAGCCTCTTTGATCAGGATTCCGGGTTTCTGGTTCAGGATACTGTAATATTCTCAGCAGAGGTCCTTATATTAAAGGAGACGTCTGTGATGCAGGATTTTATTGATCAAGACATGGAGCCATCTGGTTCTGGCTCTCTGACAGATAAGGTCGCAAAAAAAAGTTCATTTACATGGAAGGTGGAGAACTTCTTGTCCTTCAAGGAAATAATGGAGACTCGTAAAATTTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGTATTGGTGTCTATGAGTCCTTTGACACGATTTGCATCTATCTGGAAAGTGATCAGTCTGTTGGCAGTGATCCAGATAAAAACTTTTGGGTCAGATACAAAATGGCCGTGGTGAATCAAAAGTATCCAGCAAAAACTGTGTGGAAGGAGTCTTCTATTTGTACAAAGACATGGAATAATTCTGTCTTGCAATTCATGAAGGTATCAGATATGCTAGAGGCAGAAGCGGGGTTTCTTGTACGAGATACAGTTGTTTTCGTATGCGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAGGATGCTTTGACTACTGATCCAGACGAACTCATTGATTCAGAAGACAGCGAAGGAATAAGTGGTGATGAAGAAGACATTTTTAGAAACCTTCTATCCACAGCTGGGTTTCATCTAACATATGGGGATAATCCTTCACAACCACAAGTCACTTTGCGAGAAAAACTTTTAATGGATGCTGGTGCCATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTACTTCTTCCTACTAAGCTTTCCAGTAGCAATGATGGGAAGAAGGTCTCAAAGACAGATGAGTCATCCCCCAGTTTAATGAATTTGCTGATGGGAGTCAAAGTATTACAGCAGGCAATTATTGATTTACTGTTAGATATAATGGTTGAGTGTTGTCAACCTTCAGAAGGGGGCTCTGGAGATCATTTGGAAGCAAATTCAAAGCCTTCTGTTCCTAGCAGTGGAACTACTACCACATCACTGGAAGGTGAAACTGAAAATGCAGCATCAGAGGTTGAAGGTTTTCCTCCATTTCAGAGATTGGATTCCGTAGAGGAAAGTAGTAGTGCTCCGGCTGTACAAAGCTCTGACATGTTAAGAACGGATAGGCAGGGTAAGTCTCTACCTGAAGACCTAATACATCCACCTGAAACATCTGCTGGGGTTTCGGAGAATGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGCTTGATTGTAAATTCATTGAGAGCGCTAGATGGGGCTGTCCCTCGAGGATGTCCTGAACCAAGAAGACGGCCTCAGTCTGCCCAAAAGATTGCTCTTGTGCTGGATAAAGCTCCCAGACATCTACACTCTGACCTGGTTGCACTAGTACCTAAATTGGTTGAGCATTCAGAACATCCTTTGGCTGCTGGTGTGCTTCTAGAACGGCTTCAACAGCCTGGTGCTGAGCCAGCACTGCGAATACCTGTCTTTGGTGCTCTTAGTCAATTGGAGTGTGGCACTGAAGTTTGGGAACAAATTCTATTTAAATCTATTGAGTTTTTAGCAGATTCGAATGATGAGCCTCTTGCTGCAACTATAGATTTTGTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCGGTGAGATCTGTACGTGGTAGGCTGAAGAATTTGGGCATGGAGGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACTGTAAATAGTTGGGGTGATGTTTCTGATGTTATACTCAGAGATATTGATTGTGATGATGCCGATGATTTCTGCTCAGAAATATCCCGTGAGCTTTTCTTATTTGGTGAAGCTGGCCCTGCTTCAGAAAGTTTGCATCCATTGGATGAACAGGATTTACATGCTGCTCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCGATACCTTGTCTTGCGGTTGAAGCATCGCAGACATTTGAGAGAGCTGTAGCTCGAGGTGCCATCACAGCTAAATCTGTTGCTGTGGTGCTGGAAAAACGTCTTGCTCAAAAAGCAAATAGTAACACTAGATTCATAGTCGAAAGCTTCCAGCCTGGAGATTCTGTAATAGATGGAGAAACTAACGAGTCTCTGAGAGTCCCGCGGGATGATTTTACTTCAATTGTTGGTCTTGCTGAAACATTAGCACTCTCTAGAGATCCTCGTGTTAGAGGGTTTGTGAAAATGCTATATCCATTATTGTTTAAGGGGTATGCAAGTGAGTCATATCGGGGCAGGATGCTAAAAAGATTGGTTGACCGTGTATCCAGCAGTGCAGAAAATAACCGTGAAGTAGATATGGATTTGGAAATTCTGGTTATGTTGATTGGTGATGAACAAGAAATAATCAGACCTGTGCTAATTATGATGCGAGATGTTGCAGAACTAGCAAATGTTGACCGTGCTGCTCTCTGGCACCAGTTATGTGCTACTGAAGAGGAAAGCATCCGTATCCGTGAAGAAAGCAAAGTAGAAATTGCGAATATGATGAAAGAAAAAACTGCTCTATCTCAAAAGTTGAGTGAATCTGATGCTATGAATATTCGCCTTAAGAATGAGATGAAGGCTGAGTTGGAGCGATTTTCTCGCGAGAAAAAGGAACTTTCTGAACAAATACATGACATTGAGAGTCAGCTTGAGTGGCTCCGCTCTGAGCGAGATGATGAGATTGTGAAGTTAACAGCAGAGAAGAAAGTCCTCCATGATCGTCTCCATGATGCTGAGACTCAAATAGCACAACTGAAATCCCGAAAACGTGATGAGATGAAGAAAGTAGTGAAGGAAAAAAATGCACTTGCTGAGAGATTGAAGAGTGCCGAAGCTGCTCGAAAAAGATTTGATGAACAACTGAAACGGTATGCAAATGAGAATATGACCAGGGAAGAAATCCGGCAGTCGCTAGAAGATGAAGTTCGCAGGCTTACACAAACAGTTGGACAGACTGAAGGAGAAAAGAGGGAGAAGGAAGAGCAGATTGCTCGATGTGAAGCATATATTGATGGAATGGAAGCGAAATTGCAGGCCTGCCAGCAATATATCCATTCACTTGAAGCATCGCTACAAGAGGAAATGTCAAGACATGCCCCTCTGTATGGTGCTGGTTTGGAAGCTCTGTCAATGAAGGAGCTAGAGACATTATCTCGAATTCACGAAGAAGGATTAAGGCAAATTCATACTCTTCAGCAGCGCAAAGGGAGCCCCGCTGGCAGTCCTCTTGTAAGCCCCCATTCCCTCTCCCACAGTCATGGGTTGTACACTTCTGCACCGCCTCCAATGGCAGTCGGTATGCCTCCTTCACTCATCCCCAATGGCTCAGGGATCCACAGCAATGGGCATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATGCTTGA 5073 43.43 MKQSISEAVSSSSTTASSDHSQSSSSSSSSSSSSTSTTPLEKPQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMTSSLVACPAPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGAEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSNFSKNGGLIGGRNGSGIRKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDMEPSGSGSLTDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDMLEAEAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSSSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGGSGDHLEANSKPSVPSSGTTTTSLEGETENAASEVEGFPPFQRLDSVEESSSAPAVQSSDMLRTDRQGKSLPEDLIHPPETSAGVSENVFLRTKTKWPEQSEELLGLIVNSLRALDGAVPRGCPEPRRRPQSAQKIALVLDKAPRHLHSDLVALVPKLVEHSEHPLAAGVLLERLQQPGAEPALRIPVFGALSQLECGTEVWEQILFKSIEFLADSNDEPLAATIDFVFKAGAQCQHLSEAVRSVRGRLKNLGMEVSPCVLDLLSKTVNSWGDVSDVILRDIDCDDADDFCSEISRELFLFGEAGPASESLHPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLEKRLAQKANSNTRFIVESFQPGDSVIDGETNESLRVPRDDFTSIVGLAETLALSRDPRVRGFVKMLYPLLFKGYASESYRGRMLKRLVDRVSSSAENNREVDMDLEILVMLIGDEQEIIRPVLIMMRDVAELANVDRAALWHQLCATEEESIRIREESKVEIANMMKEKTALSQKLSESDAMNIRLKNEMKAELERFSREKKELSEQIHDIESQLEWLRSERDDEIVKLTAEKKVLHDRLHDAETQIAQLKSRKRDEMKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSPHSLSHSHGLYTSAPPPMAVGMPPSLIPNGSGIHSNGHVNGGAVGPWFNHA 1690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3352581 3366353 + MELO3C003713.2.1 Cme04g00422 324683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme04g00422 1690 Coils Coil 1455 1570 - -
Cme04g00422 1690 SUPERFAMILY TRAF domain-like 79 216 - -
Cme04g00422 1690 SMART math_3 249 362 IPR002083 GO:0005515
Cme04g00422 1690 SMART math_3 80 188 IPR002083 GO:0005515
Cme04g00422 1690 SMART math_3 417 529 IPR002083 GO:0005515
Cme04g00422 1690 SMART math_3 585 685 IPR002083 GO:0005515
Cme04g00422 1690 SUPERFAMILY TRAF domain-like 413 554 - -
Cme04g00422 1690 CDD MATH 582 704 IPR002083 GO:0005515
Cme04g00422 1690 CDD MATH 82 208 IPR002083 GO:0005515
Cme04g00422 1690 Coils Coil 1384 1404 - -
Cme04g00422 1690 Coils Coil 1689 1690 - -
Cme04g00422 1690 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 405 557 IPR008974 GO:0005515
Cme04g00422 1690 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 570 706 IPR008974 GO:0005515
Cme04g00422 1690 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 240 388 IPR008974 GO:0005515
Cme04g00422 1690 SUPERFAMILY TRAF domain-like 242 388 - -
Cme04g00422 1690 MobiDBLite consensus disorder prediction 1625 1655 - -
Cme04g00422 1690 Coils Coil 1412 1450 - -
Cme04g00422 1690 MobiDBLite consensus disorder prediction 862 945 - -
Cme04g00422 1690 MobiDBLite consensus disorder prediction 872 892 - -
Cme04g00422 1690 Gene3D - 1446 1640 - -
Cme04g00422 1690 SUPERFAMILY TRAF domain-like 580 705 - -
Cme04g00422 1690 ProSiteProfiles MATH/TRAF domain profile. 412 548 IPR002083 GO:0005515
Cme04g00422 1690 CDD MATH 413 548 IPR002083 GO:0005515
Cme04g00422 1690 PANTHER TRAF-LIKE FAMILY PROTEIN 31 1689 - -
Cme04g00422 1690 MobiDBLite consensus disorder prediction 1625 1649 - -
Cme04g00422 1690 PANTHER TRAF-LIKE FAMILY PROTEIN 31 1689 - -
Cme04g00422 1690 MobiDBLite consensus disorder prediction 1 45 - -
Cme04g00422 1690 ProSiteProfiles MATH/TRAF domain profile. 580 704 IPR002083 GO:0005515
Cme04g00422 1690 Pfam MATH domain 443 550 IPR002083 GO:0005515
Cme04g00422 1690 Pfam MATH domain 86 210 IPR002083 GO:0005515
Cme04g00422 1690 Pfam MATH domain 593 700 IPR002083 GO:0005515
Cme04g00422 1690 MobiDBLite consensus disorder prediction 908 928 - -
Cme04g00422 1690 ProSiteProfiles MATH/TRAF domain profile. 78 208 IPR002083 GO:0005515
Cme04g00422 1690 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 77 225 IPR008974 GO:0005515
Cme04g00422 1690 MobiDBLite consensus disorder prediction 1 44 - -
Cme04g00422 1690 CDD MATH 245 377 IPR002083 GO:0005515
Cme04g00422 1690 ProSiteProfiles MATH/TRAF domain profile. 244 381 IPR002083 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme04g00422 - - - csv:101209841 3157.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00422 Cme-Chr4:3352581 Cme05g00057 Cme-Chr5:359559 1.54E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme04g00422 Cme_Chr04 FPKM 79.047867 85.587387 112.278519 109.474594 49.403416 55.270264 48.732243 174.993713 183.632507 156.838699